Flavobacterium channae: LOS89_02920
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Entry
LOS89_02920 CDS
T08502
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fcb
Flavobacterium channae
Pathway
fcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS89_02920 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcb03019
]
LOS89_02920 (recQ)
03400 DNA repair and recombination proteins [BR:
fcb03400
]
LOS89_02920 (recQ)
Enzymes [BR:
fcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOS89_02920 (recQ)
Messenger RNA biogenesis [BR:
fcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOS89_02920 (recQ)
DNA repair and recombination proteins [BR:
fcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOS89_02920 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
UGS24233
LinkDB
All DBs
Position
680184..682379
Genome browser
AA seq
731 aa
AA seq
DB search
MNPNEIDLHKELKKYFGFNQFKGLQEQVVKSIITGNNTFVIMPTGGGKSLCYQLPALVLD
GTAIVVSPLIALMKNQVDAIRSLSSESGIAHVLNSSLNKTEIAKVKKDITSGITKLLYVA
PESLTKEEYIEFLNSVKLSFVAIDEAHCISEWGHDFRPEYRNLRNIVRLLGDVPMIGLTA
TATPKVQEDILKNLDMPDANTFKASFNRPNLYYEVRTKTKNVESDIIRFIKQHKGKSGVI
YCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMGID
KPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFLSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFDDVNGEGADMDDNVRNPKKKVEAQDQVVT
LLKMVRDTKQLFKSKEVVLALVGKVNAIIKAQKIDTQSYFGSGSGFDEKYWMALIRQVLV
AGLLTKDIETYGVLKMSEKGEAFIKKPESFMMSEDHEYNEEEDEAIVTAAKSTGTADEAL
MSMLRDLRKKEAKKLGVPPFVIFQDPSLEDMALKYPITVEELSNVHGVGEGKAKKYGKPF
VELINRYVEDNDIIRPDDLVVKSTGANSGLKLYIIQNVDRKLGLDDIAKAKGLDMDGLLK
EMEQIVYSGTKLNINYWIDEILDEDQQEEIHDYFMDSESDNIKDALKEFDGDYDIEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaaacgaaattgatttacataaagaattaaagaaatattttggttttaaccag
ttcaaaggtcttcaagaacaggttgttaaaagtattattacaggaaataatacttttgtt
attatgccaacaggtggaggaaagtcgttatgttatcaattaccggctttagtgcttgat
ggaactgcaattgttgtttctccacttattgccttaatgaaaaaccaagttgatgctatt
cgaagcttgagttctgagtctggaattgcacacgttttaaactcatctttaaataaaaca
gagattgctaaagtaaaaaaagacattacttcaggaatcactaaattgttatatgttgct
ccagaatcgttaacaaaagaagaatatattgaatttttaaatagcgtaaaattatctttt
gttgctattgatgaagcacactgtatttcagaatgggggcatgattttcgcccagaatat
agaaacttaagaaatattgttcgtttattaggcgacgttccaatgattggattaaccgct
acggcaactccaaaagtacaagaagatatcttgaagaatttggatatgccagatgcaaat
acgtttaaagcttcatttaatcgtcctaatttatattacgaagtacgtacaaaaacgaaa
aatgttgaatcagatattattcgttttataaaacaacataaagggaaatcgggagtaatc
tattgtttgtcacgtaaaaaagtagaagaaattgctcaggttttacaagtaaacggaatt
agtgctgtgccttatcatgcaggtttagatgctaaaacacgcgctaaacatcaagatatg
tttttgatggaagatgttgaggttgtagtggcaacgattgcttttggtatgggaatcgat
aagcccgatgttcgttatgtaattcatcatgatattccaaaatcactagaaagttattat
caagaaacgggtcgtgctggtcgcgatggaggagaaggacactgtttggcgtactattcc
tataaagatattgagaagctagaaaaattcctttcaggaaaaccagttgccgaacaagaa
ataggttttgctttgttacaagaagtggttgcttatgcagaaacgtcaatgtcgcgtcgt
aagtttttgctacactattttggtgaagaatttgacgatgtaaacggagaaggtgctgat
atggatgacaacgttcgtaatcctaagaaaaaagttgaagcgcaagatcaagtagttacc
ttgttaaaaatggttcgcgataccaaacaattattcaagtcaaaagaagttgttttggca
ttagttggtaaggtaaatgcaattattaaagcacaaaaaatagatacgcaatcttatttt
ggaagcggttcgggtttcgatgaaaaatattggatggcacttattcgtcaggttttagtt
gcgggacttcttacaaaagatattgaaacctatggtgtgttgaaaatgtctgaaaaagga
gaagcatttatcaaaaaaccagaatcgtttatgatgtcggaagatcatgaatacaacgaa
gaagaagatgaagcaattgtaacagctgctaaatctacaggaacagcagatgaagcttta
atgagtatgttgcgcgatttgcgtaaaaaagaagcgaaaaagcttggagttcctccattt
gttatttttcaagatccttcattagaagatatggctttgaaatacccaattactgttgaa
gagttaagtaatgttcacggtgttggagaaggaaaagcaaaaaaatacggaaaaccattt
gttgagttaatcaacagatatgtagaagataacgatattattcgtcctgatgatttagta
gtaaaatctactggagccaattctggattgaagttgtatattattcaaaacgttgataga
aaattaggtttagacgatattgctaaagctaaaggtttggatatggatggtttgttgaaa
gaaatggaacaaattgtgtattcgggaactaaattgaatatcaattattggattgacgaa
attttagatgaagatcaacaagaagaaattcacgattatttcatggattctgaatcagat
aatattaaagatgctttgaaagaattcgatggcgattacgatatcgaagaattacgattg
atgcgaattaagtttattagcgaagtagcaaattaa
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integrated database retrieval system
