Flavobacterium channae: LOS89_04245
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Entry
LOS89_04245 CDS
T08502
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fcb
Flavobacterium channae
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fcb03009
]
LOS89_04245 (rlmD)
Enzymes [BR:
fcb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LOS89_04245 (rlmD)
Ribosome biogenesis [BR:
fcb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LOS89_04245 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
Met_10
TRAM
Methyltransf_15
PrmA
FtsJ
PCMT
Methyltransf_11
Methyltransf_32
N6_N4_Mtase
UPF0020
BRAP2
Motif
Other DBs
NCBI-ProteinID:
UGS24490
LinkDB
All DBs
Position
complement(977891..979303)
Genome browser
AA seq
470 aa
AA seq
DB search
MGKKRTEKIVFENVKILDAGAKGVSVAKAPDGKVIFLPNVVPGDVVDVQTMKKRKAYYEG
KAIKIHEFSEHRVDPVCEHFGSCGGCKWQNMKYSQQLFFKNQEVFNNLKRIGKIELPEFE
PILGSEKQLFYRNKMEFGFSNARWMTDAEIQSGAEFDNKNALGFHIPRMWDKILDIEKCH
LQEDPSNEIRNEIKRFANENNLTFFNARATEGLLRTLMIRTASTGEIMVLIQFFENDKNG
IELMMNFLAERFPQITSLQYVINQKLNDTLYDQEIILFKGRDYILEEMEGLHFSINAKSF
YQTNSDQAYELYKITREFAGLTGNETVYDLYTGTGTIAQFVSKKAKKVIGVEAVPEAIID
AKANAERNNINNCEFYVGDMKNVFNDEFISKHGQPDVIITDPPRDGMHKDVVEMLLKTNV
PRIVYVSCNSATQARDLALMDEKYKVVRVRPVDMFPQTHHVENVVLLEKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaagagaacagaaaaaatcgtattcgaaaacgtaaaaatccttgatgcaggt
gcaaaaggtgtatcggtagcgaaagcgccagatggtaaagtaatatttcttccaaacgta
gttcctggtgatgtagtagatgtgcaaaccatgaagaaaagaaaagcctactacgaagga
aaagcaattaaaattcatgaattttctgaacatagagtagatccagtttgcgaacatttt
ggctcttgtggtggttgtaaatggcaaaacatgaaatacagccaacaattattctttaaa
aatcaggaagtttttaataatttaaaaagaataggtaaaattgaattaccagaattcgaa
ccaattttaggttctgaaaagcaattgttttacagaaataaaatggaatttggtttctct
aacgctcgttggatgaccgatgctgaaattcaatcgggagccgaatttgacaataaaaat
gccttaggatttcatataccaagaatgtgggataagattttagatattgaaaaatgtcac
ttacaagaagatccttcaaatgaaattcgtaatgaaattaaacgctttgcaaacgaaaac
aacttaacgttttttaatgcaagagcgactgaaggtttgttacgtacattaatgattcgt
actgcttcaacaggagaaatcatggtgttgattcagttttttgaaaatgataaaaacgga
atcgaattgatgatgaatttcttagcagaacgttttccacaaattacatcgttacaatat
gttatcaatcaaaaattgaatgacactttgtacgaccaagagattattttattcaaaggt
cgcgattatattttggaagaaatggaaggtttgcattttagtattaatgcaaaatctttc
tatcaaaccaattcggatcaagcctacgaattatacaaaataactagagaatttgctggt
ttaacaggaaacgaaacagtttacgatttgtatactggaacaggaactattgcgcaattc
gtatctaaaaaagcgaaaaaagtaattggtgtagaagcagttccagaagcaattattgat
gcaaaagcaaatgcagaacgcaataacattaacaattgtgagttttatgtgggtgacatg
aaaaatgttttcaacgacgaattcataagcaaacacggacaaccagacgttatcattacc
gatccaccaagagatggaatgcataaagatgttgtagaaatgttattaaaaactaatgtt
ccgagaattgtttatgtaagttgtaattcggcaacacaagctcgtgatttagctttaatg
gacgaaaaatacaaagtagttcgtgtgcgtccagtagatatgtttcctcaaacacatcat
gttgaaaacgtagttcttttagaaaaaagataa
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