Flavobacterium channae: LOS89_04820
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Entry
LOS89_04820 CDS
T08502
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fcb
Flavobacterium channae
Pathway
fcb03030
DNA replication
fcb03430
Mismatch repair
fcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOS89_04820
03430 Mismatch repair
LOS89_04820
03440 Homologous recombination
LOS89_04820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcb03032
]
LOS89_04820
03400 DNA repair and recombination proteins [BR:
fcb03400
]
LOS89_04820
Enzymes [BR:
fcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOS89_04820
DNA replication proteins [BR:
fcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOS89_04820
DNA repair and recombination proteins [BR:
fcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOS89_04820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
GIY_YIG_2
Rv2179c-like
T5orf172
DUF7508
Motif
Other DBs
NCBI-ProteinID:
UGS24599
LinkDB
All DBs
Position
complement(1089304..1090665)
Genome browser
AA seq
453 aa
AA seq
DB search
MYTILDIETTGGQFNEEGITEIAIYKFDGHEVVDQFISLVNPEKPIQPFVVKLTGINNAM
LRSAPKFYEIAKRIIEITEGCVIVAHNASFDYRILKTEFRRLGYDFKKQTLCTVELAKKL
IPEQESYSLGKLVRALGIPMADRHRASGDAMATVKLFKMLMAKDVEKEIVKSFIKTEIKS
GISPKLLDIVESLPSKTGIYYIHNEKGDLIYIGKSKNIKKRVNQHFTGTSSKSKKIQRDV
FAVSVEETGSELIALLKESEEIKINKPIYNRAQRKSIFQYALYMHKDANGYLALHVEKAD
GRKKEITSFTTLQEGRNALFKITEKYNLCQKINGLFNTNNDCFQYKIKECNGACIGEESP
EEYNDRVNEFLEENSFENNNMVIIDRGRNFDERSAILIENGIYKGYCFYDLNYQVNNIEI
LKNIIIPMQHNRDTKTIIQTYLRKNKVYKVIKF
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgtacacaatactcgacatagaaactactggaggtcaattcaacgaagaaggaattacg
gaaatcgccatttataaatttgatggtcatgaagtagttgatcaattcattagtttggtc
aatccggaaaagccgatacaaccttttgttgtaaaattaactggtataaataatgccatg
ttacgcagtgctccaaagttttatgagattgccaaaagaattattgaaattacggaaggt
tgtgttattgtagctcacaacgcatcttttgattatcgcattttaaaaaccgaattccga
cgtttaggttacgatttcaagaaacaaacactttgtactgttgaattagcaaaaaaactt
attcctgaacaagaatcgtatagtttaggaaaattagtaagagcattaggaattcctatg
gcagatcgtcatagagcaagcggagatgctatggcaactgtgaagttgtttaaaatgcta
atggctaaagacgttgaaaaagaaatcgtaaaaagctttatcaaaaccgaaatcaaatca
ggaatttcacctaagttattggatattgtagaaagtttaccttcaaaaacgggcatctac
tatattcacaatgaaaaaggtgatttaatctacatcggaaaaagtaaaaacattaaaaaa
cgtgttaatcagcattttactggaacttcgagtaaaagtaaaaagatacagcgagatgtt
tttgctgtttcggttgaagaaactggtagcgaattgattgcgcttttaaaagaaagtgaa
gaaatcaaaatcaacaaaccgatttacaatagagcgcaacgaaaaagtatttttcaatat
gctttgtacatgcataaagatgccaatggttatttagcattacatgttgaaaaagcagat
ggtcgtaaaaaagaaattacttcatttacaacgcttcaagaaggaagaaatgctttgttt
aagattactgaaaaatacaatttgtgtcaaaaaataaatggtttattcaacaccaacaac
gattgttttcaatataaaataaaagaatgcaacggtgcttgtattggcgaagaatctcca
gaagaatacaacgacagagtcaatgaatttcttgaagaaaattcgtttgaaaacaacaat
atggttatcatcgatcgtggtagaaactttgatgaaagaagcgctatattaattgaaaac
ggaatttataaaggctactgtttttatgatttaaactatcaggtaaacaatattgaaatc
ctaaaaaacatcattattccgatgcaacataatcgtgatacaaaaacgattattcaaacc
tatttgcgtaaaaacaaagtttacaaagtaattaaattttaa
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