Flavobacterium channae: LOS89_08500
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Entry
LOS89_08500 CDS
T08502
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcb
Flavobacterium channae
Pathway
fcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS89_08500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcb03019
]
LOS89_08500
03009 Ribosome biogenesis [BR:
fcb03009
]
LOS89_08500
Enzymes [BR:
fcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOS89_08500
Messenger RNA biogenesis [BR:
fcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOS89_08500
Ribosome biogenesis [BR:
fcb03009
]
Prokaryotic type
rRNA helicases
LOS89_08500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DHFR_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UGS22816
LinkDB
All DBs
Position
1838283..1840154
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AA seq
623 aa
AA seq
DB search
MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFP
LIQKIDAENRNTQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYGGASITEQAREVK
RGAQIIVATPGRMQDMINRGLVNIKNIDFCVLDEADEMLNMGFYEDICSILSDTPDEKNT
WLFSATMPQEVARIAKQFMSNPEEITVGHKNSGSATVSHEYYVVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIHSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIHDTEVDHEIDNYLPAIYEVFQDLSKEELIKRM
VSVEFNRFLNYYKKKRDIASERSERSSEPREIRAGDPVRYFINIGARDDFDWMQLKDFLK
ETLELGRDDVFKVDVKEGFSFFNTDGEHTEKVMETLNGFDLNGRRINVEISKNDGGSSSR
RDHNGRNSGGGRREGGFRGERSGAPRREGGFRGERNSSAPRREGGFRGERSSSAPRREGS
SDRSSRRTESSGDASRPRRPRRS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgagtcgctactgctggcgattaaagatcta
ggatttgagaatccgtcagaagtccaagaaaaagcgattccagtactattggaacaaaac
acagacttagtagccttagcgcaaacaggaacaggaaaaaccgcagcttttggttttcct
ttaattcaaaaaattgatgctgaaaacagaaacacgcaagcattaattttatcgccaaca
cgtgagttatgcttacaaatcaccaacgaaattaaactttattcaaagtacataaaaggg
ttacacactgtggctgtttatggtggtgcaagcattacagaacaagctagagaagtaaaa
cgtggagctcaaattattgtagctacacctggtagaatgcaagacatgattaacagaggt
cttgtaaacattaaaaacattgatttctgtgtcttagatgaggcagatgaaatgttaaac
atgggattctacgaagacatttgttccatcttatcggacacaccagacgaaaaaaacact
tggttattctctgcaactatgccacaagaagttgcgcgtattgcaaaacaattcatgtcg
aacccagaagaaattacggttggacataaaaattcaggttctgctacagtttctcacgaa
tattacgtagtaaacgctagagaccgttatgaagcattaaaacgtttagcagatgctaat
ccagatattttttcagttgttttttgtagaacaaaacgtgatacacaagcggttgccgaa
aaattaatcgaagacgggtataacgcagcagcattacacggtgacttatcgcaagcacaa
cgtgatggtgtaatgaaatcattcagagggcgtcaaattcaaatgttggttgcaacagac
gttgctgctcgtggaattgatgttgataatgttactcacgtagtaaactatcaattacca
gacgaaattgaaacatacaaccaccgttcaggaagaacaggtagagctggaaaattagga
acttctattgtaatcgttacaaaaagtgaattaagaaaaatccactctattgaacgtatc
atcaaacaaaaattcgaagaaaaaacaattccttctggaattgaaatctgcgaaattcag
ttattacatttagctaataaaattcacgatacagaagttgatcacgaaattgacaactac
ttaccagctatttatgaagttttccaagatttatctaaagaagaattgattaaaagaatg
gtttctgtagaatttaatagattcttaaactactacaaaaagaaacgtgatattgcttct
gaaagaagtgaaagaagttctgaaccaagagaaattagagctggagatccagttcgttat
ttcattaatattggtgcaagagacgatttcgattggatgcaattaaaagacttcctaaaa
gaaactttagaattaggtcgtgatgacgtatttaaagtagatgttaaagaaggtttctct
ttcttcaataccgatggtgaacatactgaaaaagtaatggaaactttaaatggttttgat
ttaaacggaagaagaatcaacgttgaaatctctaaaaacgacggaggaagcagttctaga
cgcgatcataatggaagaaattctggtggtggaagaagagaaggcggttttagaggtgaa
agaagcggtgcaccaagaagagaaggcggctttagaggtgaaagaaacagttctgctcca
agaagagaaggtggttttagaggcgaaagaagtagctcagctccaagaagagaaggtagt
tctgacagatcttctagaagaacagaaagttctggagatgcttcaagaccaagaagacca
agaagaagctaa
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