Flavobacterium channae: LOS89_09865
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Entry
LOS89_09865 CDS
T08502
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fcb
Flavobacterium channae
Pathway
fcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOS89_09865 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcb03021
]
LOS89_09865 (rpoC)
03400 DNA repair and recombination proteins [BR:
fcb03400
]
LOS89_09865 (rpoC)
Enzymes [BR:
fcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOS89_09865 (rpoC)
Transcription machinery [BR:
fcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOS89_09865 (rpoC)
DNA repair and recombination proteins [BR:
fcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOS89_09865 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
UGS23070
LinkDB
All DBs
Position
complement(2113905..2118203)
Genome browser
AA seq
1432 aa
AA seq
DB search
MTRLKDKNTVKRFNKITIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQKLDFLTEEEYLNILDTLPMENQY
LDDNDPNKFIAKMGAECIMDLLARTDLDELSYSLRHAANNETSKQRKTEALKRLNVVESF
RESNLNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPEM
KILGEGLTFYSAEEVNIALNEGRLELNARVKIRAKDFNEEGELVTKIIQTTAGRVLFNEV
VPEAAGYINEVLTKKSLRDIIGKILAVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSLGDI
RIPEQKGKLIADAREQVEGISMNYSMGLITNNERYNQVIDIWTSANAQLTELAMKNIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGIEVSALKKNE
EIVETLGERILGRVALQDVINPLDSEILVHAGEQITEAIVKKIEASPVERVDVRSPLTCE
ATKGICAKCYGRNLATGKMTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISEESS
IVTRFAGKLEIEDLKTVKGEDADGNTVDIVISRSTELKLVDAKTGILLNTHYIPYGSSIF
VKDGDVVEKGTTICKWDPYNGVIVSEFTGKIAYEDLEQGQSFLVEIDEQTGFQEKVISEG
RNKKLVPTLLIYGKDGELIRSYNLPVGAHLMVDDGEKIKAGKILVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVTFGKIKRGNREIAIESKFGEVKKYLVKLSNQILV
QENDFVKAGTPLSDGAITPEDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVRIVDPGDTLFLEDQLAHTSDFIVENDKLYGMKVVEDAGDSENLKPGQIVSPRQL
RDENSLLKRNDRNLVVARDVVTATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRDYDNTIVGSKEEYNELMAAKEEFNY
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacaagattaaaagataaaaataccgttaaaagatttaacaaaatcacgataggacta
gcttctccagaatctattttggcagaatctagaggtgaggttttaaaaccagaaactatt
aactatcgtacgcacaagccagaaagagatggtcttttctgcgaaagaattttcggtcca
gtaaaagattacgaatgtgcttgtggtaagtataaaagaattcgctacaaaggaatcgtt
tgtgaccgatgtggtgttgaagtaacggagaaaaaagtacgtagagatagagtagggcat
atcaacctagttgtgccaattgctcatatttggtatttccgttcgttaccaaacaaaatt
ggttatattttaggattaccatctaagaaattagatatgattatttactacgaaagatac
gtagtaattcaagcaggtattgctaaaaacgctgatggagaatctttacaaaaattagat
ttccttacggaagaagagtatttaaatattttagatacacttccaatggaaaatcaatat
ttagatgataatgatcctaataaattcatcgctaaaatgggtgctgaatgtattatggat
ttattagctcgtactgacttagatgaactttcatatagtttacgtcatgctgctaataac
gaaacatctaaacaacgtaagacagaagcattaaaacgtttaaatgttgtagaatcattc
cgtgagtctaacttgaatagagaaaaccgtccagaatggatgattttaaaagtaattcca
gttattccaccagaattacgtccgttagttccacttgacggaggtcgttttgcaacttca
gatttaaatgatttatacagaagagttatcatacgtaacaaccgtttaaaaagattaatg
gagattaaagctcctgaagttatcttaagaaacgaaaaacgtatgttacaagaatctgta
gattcattatttgataatacacgtaaagcttctgctgttaaaacagaatcaaacagacca
ttaaaatcgttatcagattcattaaaaggtaaacaaggacgtttccgtcaaaacttatta
ggtaaacgtgtagattattctgctcgttcggtaattgttgttggacctgaaatgaaattg
ttcgagtgtggtttgccaaaagatatggctgctgaactatataaaccattcgttattcgt
aaattaatcgaaagaggaattgttaaaacagttaagtcggctaagaaaattattgacaaa
aaagagccagtagtatgggatattttagagaatgtaattaaaggacatcctgtattatta
aaccgtgctcctacgcttcaccgtttaggtattcaagcattccaacctaagttaattgaa
ggaaaagcaatccagttacacccattagtatgtacggcattcaacgccgatttcgatggt
gaccagatggcggttcacttacctttaggaccagaagctattttagaggcacaattatta
atgttggcttctcataatatcttgaatccagcaaatggtgctcctattacagtaccttct
caggacatggttcttggtctttactatatgactaaagagcgtttgtcaactccagaaatg
aaaattttaggtgaaggtttaactttctattcagctgaagaggtaaatatcgctttaaat
gaaggaagattagagttaaatgctagagtgaaaattagagcaaaagactttaatgaagaa
ggagaattagttacaaaaattattcaaactacagcaggtagagtattatttaatgaagta
gtacctgaagctgcaggatatattaatgaggtattaactaagaaatcacttcgtgatatt
attggtaaaatattagcggttactgacgttcctacaactgctgctttcttggataacatg
aaagatatgggttataagttcgcattccgtggaggattatctttctcattaggtgatatt
agaattccagaacaaaaaggaaaattaatcgctgatgctcgtgagcaagtagaaggaatt
tcgatgaactatagcatgggtcttattactaataacgagcgttacaaccaagttattgat
atctggacttctgctaatgctcaattaacggagttagcaatgaaaaatatccgtgaagac
caacaaggtttcaactcggtatatatgatgcttgactctggagcgaggggttctaaagaa
cagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaatcaactgct
ggtggtggtgaaattattgaaaaccctatcttatcgaactttaaagaaggtctttctatc
cttgagtactttatctctactcacggtgctcgtaaaggtcttgcggatacggctcttaaa
acggccgatgcgggttacttaactcgtcgtttacatgatgtatctcaagatgtaattgta
aactctgtagattgtggtactttaagaggtattgaagtttctgctttaaagaaaaacgaa
gagattgttgaaacattaggagaaagaatcttaggacgtgttgccttacaagatgttatt
aatcctcttgattctgaaattttagttcatgcaggtgagcaaattacagaagcaatcgtt
aagaaaattgaagcatctccagttgaaagagttgatgtacgttctccattaacatgtgaa
gctacaaaaggtatttgtgctaaatgttatggtagaaacttagctactggaaaaatgact
caaaaaggtgaagcagttggagttattgcagcgcaatcaattggtgagccaggtacacag
ttaacacttcgtacgttccacgttggaggggttgctggaggtatctctgaagagtcaagt
attgttactcgttttgcaggtaaattagaaatcgaagatttaaaaacagttaaaggtgag
gatgctgatgggaatactgttgatatcgtaatttctcgttctactgagttaaaattagtt
gatgctaaaacaggtattttattaaatacgcactatattccttatggttctagtattttt
gtaaaagacggagacgttgttgaaaaaggtactacaatctgtaaatgggatccatataat
ggagttattgtttctgaatttacaggaaaaattgcttatgaagatttagaacaaggacaa
tcgttcttagttgaaatcgatgagcaaacaggtttccaagagaaagtaatttctgaaggt
agaaataaaaaattagttcctactttattaatttatggtaaagatggtgaattaattcgt
tcttacaacttaccagtaggtgctcaccttatggtagatgacggagagaaaattaaagct
ggtaagattttagttaaaattcctcgtcgttcttcaaaagcgggagatattacaggaggt
ttaccaagaattacagagttgttagaggctcgtaatccttcaaacccagcagtagtttct
gaaattgatggtgttgtaactttcggaaaaattaagagaggtaaccgtgaaatcgctatc
gaatctaaatttggtgaagtgaagaaatacttggtaaaactttctaaccaaatcttagtt
caagagaatgacttcgtaaaagcgggtacaccactttctgatggagcaattactccagag
gatatcttaagaattcaaggaccatctgctgttcaacagtatttagtaaatgaaattcaa
gaggtataccgtttacaaggggtaaaaatcaatgataagcactttgaggtagtaattcgt
caaatgatgcgtaaagtaagaattgtggatccgggagatacattattcttagaagatcaa
ttagctcatacaagtgatttcatcgttgaaaacgataaattatacggaatgaaagttgtt
gaagacgcaggtgattctgagaatttaaaaccaggtcagattgtttctccacgtcagtta
agagatgaaaattcgttattaaaacgtaatgatagaaacttagttgttgctcgtgatgtt
gttacggcaactgctactccagtacttcaaggtattacaagagcgtcgttacaaacgaaa
tcatttatttctgctgcatcgttccaggaaactactaaagtattaaatgaagctgcagtt
gcaggtaaaatagatacattagaaggattgaaagagaatgttattgtaggtcatagaatc
ccagctggtacaggtatgagagattatgataatacaatagtaggatctaaagaagaatac
aacgagttaatggctgctaaagaagagtttaactactaa
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