Flavobacterium channae: LOS89_11930
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Entry
LOS89_11930 CDS
T08502
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
fcb
Flavobacterium channae
Pathway
fcb02020
Two-component system
fcb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOS89_11930 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LOS89_11930 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcb03021
]
LOS89_11930 (rpoN)
Transcription machinery [BR:
fcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOS89_11930 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
HTH_Crp_2
MarR
CLZ
Crp
Motif
Other DBs
NCBI-ProteinID:
UGS23453
LinkDB
All DBs
Position
2563578..2565041
Genome browser
AA seq
487 aa
AA seq
DB search
MLKHSLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLQEELVENPALEESSKEDNYDLDDY
GSDTDDYDDYDNEHIDTGDINIDEYLSNDETPDYKYQTNNYSDDDEDKTMPFAAPVSFHQ
DLINQLNTFILTDEERDIAEFLVGSIDDMGYIRRSIQDIVDDMAFTQGIYTDEPTVERIL
HLVQDLEPAGVGARDLQECLLLQLKHKTPSDSIALAINVIEQQFDAFTKKHYDKLLQKFD
VSQQQLRKAIDEIEKLNPKPGGSFDGNQKAVEHIVPDFTIRIVDGELELSLNGRNAPELH
VSKDYQEMLQSYKDTSEKSSSQKDAVQFIKQKLDSAKWFIDAIKQRQETLYVTMNAIMFY
QQEYFLEGEETKLRPMILKDIADMVGLDISTVSRVANSKYVDTPYGTKLIKEFFSESMTN
DQGEEVSTIEIKNILQQVISEEDKRKPLPDDQLAEILKERGYPIARRTIAKYREQLDIPV
ARLRKKI
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacacagtttacaattcaaattatctcaaaaattatcgcctcaacaaattcag
ttgatgaagttaattcaattgcctacgcaagcttttgagcaacgtcttcaggaagaatta
gtagagaatcctgctttggaagaaagtagcaaggaagataattacgatttagatgattat
ggaagtgatactgatgattacgacgattacgataacgaacacatcgatacaggcgacatc
aacattgacgaatatttaagcaatgacgaaacgccagattataaatatcaaaccaacaat
tacagcgatgacgatgaagacaaaacgatgccctttgcggctccagtaagttttcatcaa
gatttaatcaatcagttgaatacttttattttaactgatgaggaacgagacattgctgag
tttttagtaggaagtatcgatgatatgggctatatcagaagaagcattcaagatattgtg
gatgatatggctttcactcaaggtatttataccgacgagccaacagtagaacgcatctta
catttggttcaagacttagaacctgcaggtgttggtgctcgcgatttacaagaatgtttg
ttgttacaattaaaacacaaaacgccatcggattcgattgctttagctattaatgtgatt
gaacaacaatttgatgcttttaccaaaaaacattacgataaattgttacaaaaatttgac
gtttcgcaacaacaactgcgcaaagctattgacgaaattgaaaaactaaatccgaaacca
ggaggaagtttcgacggtaatcaaaaagctgtagaacatattgttcctgattttactatt
cgaattgttgatggcgaactagaactttcgttaaacggaagaaacgctccagaattgcac
gtttctaaagattatcaagaaatgttgcagagttataaagacacttctgaaaaatcgagt
tcgcagaaagatgcagttcaatttatcaagcaaaaattagattcggcaaaatggttcatt
gatgcgattaaacaacgtcaggaaacattgtatgtgaccatgaatgcgataatgttttat
cagcaagaatactttttagaaggagaagaaaccaaacttcgtccgatgattctaaaagac
attgccgatatggttggtttagatatttcaacggtttcgcgtgttgccaatagcaaatat
gttgatacgccatacggaacaaaactaatcaaagaattctttagtgaatcgatgacaaac
gatcaaggtgaagaagtatcaacaatcgaaattaaaaatatcttacaacaagttatttcg
gaagaagataaaagaaaacctttaccagatgatcagttagcggaaattttgaaagaaaga
ggttatccaattgctagaagaaccatcgcaaaataccgcgaacaactagatattccagta
gcgcgtttgagaaaaaaaatctaa
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