Flavobacterium cyclinae: LOS86_01195
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Entry
LOS86_01195 CDS
T08416
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOS86_01195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcc03400
]
LOS86_01195 (mfd)
Enzymes [BR:
fcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOS86_01195 (mfd)
DNA repair and recombination proteins [BR:
fcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOS86_01195 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UGS21271
LinkDB
All DBs
Position
246994..250347
Genome browser
AA seq
1117 aa
AA seq
DB search
MSKSDIISIYDKSPKIAVLESTFAARQKSQMTGLVGSSLSFVANSLFSKSELPFLILFSN
KEEAAYYLNDLEQLINAEDVLFYPSSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAII
VSYAEAIFEKVVTRKELEKNTLKLSVGDNLSIDFINETLFEYNFKRVDFVTEPGEFSVRG
GIIDVFSFSNDNPYRIEFFGNEVDSIRSFDVETQLSVEKLKKISIIPNVENKLLQENRES
FLNYINEKTVLVIQNTELLGQQLDKLFDKANEAFEKLSKDIQHAKPEELFLNQKQFLKRA
LDFSVIELHTNAVFKTDKKVEFLIQPQPSFNKQFDLLLNNLSENHFNGYKNYLCCSNENQ
ASRFHAIFEDIDEANHESIRKQYKTMVLPLFEGFIDEENQIACYTDHQIFERYHKFSIKN
GYSKKQTITLKELTSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYV
SIHSLHKISKYNGKDGAPPKIYKLGSTAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGF
QFAPDSYLQKELESSFIYEDTPDQVTATADVKADMESERPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAVLVPTTILAYQHYRTFSERLKDMPVTVSYLNRFRTTKQKADTLQKLQE
GKVDILIGTHQLVNKNVLFKDLGLLIIDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIETQVIRFNEEVIRDAVSYEIQRGGQVYFINNRIEN
IKEVAGMIQRLVPGAKVGIGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSMMTGEAQKRITALEQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYQEENDI
ETKEFVKDIQIDTDFELLFPDEYINNITERLNLYNELSQIKDEAALQQFEQKLIDRFGAL
PKPAIALLNSVRIKWKATAMGIERLMMKQGKMVGYFIGDQQSDFYQSNRFMKVLQFAQRN
SNVCKIKEKETKNGLRLLLTFDNVKSVNKVLELLEGI
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagtccgacattatatccatttacgataagtcaccaaagattgccgttttagaa
agtacattcgcagcgcgccaaaagtctcagatgacgggtttggttggttcgtcgttgtct
tttgtggcaaattcgttattttcgaaatctgaacttcctttcctgattttattcagtaat
aaagaagaagcggcttattatttgaacgatttagaacaactaattaatgccgaagacgtt
cttttttacccaagttcgtaccgaagaccctaccaaattgaagaaaccgacaacgctaat
gtgctgcttcgtgctgaagttttaaatcgaatcaattcacgcaaaaaaccagcaattatt
gtttcgtatgcagaagccatttttgaaaaagtagttactcgaaaagagttagaaaaaaac
acgttaaaactttcggttggagataatttatcaattgattttatcaacgaaactttattt
gaatacaatttcaaacgtgtcgattttgttaccgaaccaggcgaattttccgttcgtggt
ggaatcatcgacgtgttttcgttttccaatgataatccgtaccgaattgaatttttcgga
aacgaagtcgatagcatccgaagttttgatgtggaaactcaattgtcagttgaaaagctg
aaaaagatttccatcattccaaatgtagaaaataaattactgcaagaaaatcgtgaaagt
ttcttaaattatatcaacgaaaaaacggttttagttattcaaaataccgaattattaggc
caacaattggataaattattcgacaaagccaatgaagctttcgagaaattatctaaagat
atccaacacgcaaaacccgaagaattattcctaaatcaaaagcaatttttaaaacgagca
cttgatttttcagttattgaattgcatacgaacgctgtttttaaaaccgataaaaaagtt
gaatttcttattcagccgcaaccttcgttcaataagcaatttgatttgttgttgaacaat
ttgagtgagaatcatttcaacggttacaaaaattatttgtgttgttccaatgaaaatcaa
gcgagtcgttttcatgctatttttgaagatattgatgaagccaatcatgaaagcattcgc
aagcaatacaaaaccatggtgttgcctttatttgagggttttatagacgaagaaaatcaa
atagcgtgttacaccgaccatcaaatttttgagcgttaccataagttttccatcaaaaat
gggtattcgaaaaagcaaacgattaccttaaaagaactgacttcgttatcggttggcgat
tatgtaacgcacatcgatcacggcattggaaaatttggtggcttgcagaaaattcaagta
gaaggcaaaacgcaagaagccataaaattggtttatgctgataacgatattgtgtatgtg
agcattcattcgctacataaaatctcaaaatacaatgggaaagatggcgcgcctcctaag
atatacaaattaggaagcaccgcttggaaagccttaaaacaaaagacaaaagcacgtgta
aaacacattgcgttcaacctaattcagttgtatgcgaagcgaagattagataaaggtttt
cagtttgcacccgatagttatttgcaaaaagaattagaaagttctttcatttacgaagat
acgcctgaccaagttaccgcaacagccgatgtaaaagccgacatggaaagcgaacgtccg
atggatcgattggtttgtggtgacgttggttttggaaaaacagaagttgccattcgtgca
gcttttaaagcggtagataatggaaaacaagtcgcggttttggttccaacaaccatttta
gcctatcaacattaccgaacattttcggaacgtttgaaagatatgccagttaccgtgagt
tatttgaaccgatttagaactacgaaacaaaaagccgatacgcttcaaaaattgcaagaa
ggaaaagtcgatattttgattggaacacaccaattggtgaataaaaatgtcctgtttaaa
gatttaggtttgttgattatcgacgaagaacaaaaattcggagtaaacgtaaaagacaaa
ttgaaaaccatagctacgaatgtcgataccttgactttaacggcaactccgattccgaga
acgttacagttttcgttgatggcggctcgagatttatcggtaattacaacgcctccaccc
aatcgttatccgattgaaacgcaagtgattcgttttaatgaagaagtcattcgcgatgca
gtttcctacgaaattcaacgtggtggccaagtttatttcatcaataaccgaattgaaaac
atcaaagaagttgccggaatgattcagcgattggtgccaggagcaaaagtgggcatcggt
cacggtcaaatggatggaaaaaaattagaagaattgatgttggcttttatggaaggcgaa
tttgacgttttggtcgcaactaccattatcgaaagcggtttagatgtaccaaatgccaat
actattttcatcaataatgcaaataatttcggattgtctgatttgcatcaaatgcgtggt
cgcgtgggaagaagtaataaaaaagcgttttgttatttcattacgccaccgtattcgatg
atgacgggagaagcgcaaaaacgtattacggctttggaacaattcagcgaattaggaagc
ggtttcaatattgcaatgaaggatttggaaattcgtggtgcaggagatttattaggtggt
gaacaaagtggttttatcaatgaaattggttttgatacctatcaaaaaatcatgaacgaa
gccattgacgagttgaaagaaaacgaattcaaagacttgtaccaagaagaaaacgatatc
gaaaccaaagagtttgtcaaagacattcaaattgataccgattttgaattgctgttccca
gatgagtacatcaacaacattactgaacgtttgaatttatacaacgaattaagccaaatt
aaagacgaagcagctttacaacaatttgaacaaaaactaatcgaccgttttggagcgtta
ccaaaaccagcgattgcgttactaaacagcgtgcgcatcaaatggaaagccacagcgatg
ggaattgaacgtttgatgatgaaacaaggtaaaatggtgggttatttcattggcgaccaa
caaagcgatttctaccaaagtaaccgttttatgaaagtgctacaatttgcccaacgcaat
agcaatgtttgtaaaataaaagaaaaagaaaccaaaaacggcttacgtttattactgact
tttgataatgtgaaatcagtgaataaggtgctggagttgttggaggggatttaa
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