Flavobacterium cyclinae: LOS86_02775
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Entry
LOS86_02775 CDS
T08416
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS86_02775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcc03019
]
LOS86_02775
03016 Transfer RNA biogenesis [BR:
fcc03016
]
LOS86_02775
Enzymes [BR:
fcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LOS86_02775
Messenger RNA biogenesis [BR:
fcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOS86_02775
Transfer RNA biogenesis [BR:
fcc03016
]
Prokaryotic type
tRNA degradation factors
LOS86_02775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH-I_KHDC4-BBP
KH_PNO1_2nd
Tudor-knot
Motif
Other DBs
NCBI-ProteinID:
UGS21567
LinkDB
All DBs
Position
complement(588432..590600)
Genome browser
AA seq
722 aa
AA seq
DB search
MIPKVFQETIDLGDGRSISIETGKLAKQADGSVVVRMGDAMLLATAVSARTANPGVDFLP
LTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMIQLM
SHDDNVMPDALAGLAASAALAVSDIPFYNLISEVRVARVNGKFVINPSREELEQSDIDMM
IGASKDSVAMVEGEMKEISEAEMVEAIKFAHEAIKIQIEAQERLRAAVGSPAYREYEPEK
EDESVYAKVKAASYDKYYAIAQEASAKSERGEKFAVVKEEVKALFTEEEYAENPDLAELV
SKYNYKVQKTAVRNVILEKGIRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALAT
VTLGTSREANVIDSPSEQGEEKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNLAQRALKN
MIPADCPYTIRVVSEVLESNGSSSMATVCAGTMALMDSGVQMVKPVSGIAMGLITDGEKF
AVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIMEQALGQAREGRMHILG
KITETIAQPRPTVKPKAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEQ
GVVEILGTNQEGIDAVLAKIDSIIFKPEMGEAYEVKVIKMLDFGAVVEYTKAPGNEVLLH
VSELAWERTENVTDVVNMGDVFMVKYLGIDPKTRKEKVSRKALLPRPPREEKPIEKKDKP
QG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtattccaagaaacaatcgatttaggagatggaagaagcatttcaatc
gaaactggaaaattagccaaacaagcagatggttctgtcgtggttcgtatgggcgatgcc
atgttattagctactgctgtatcagcccgtactgccaatcctggggtagattttttacct
ttaacagtagattaccgcgaaaaattcgcagcagctggtcgttttcctggaggtttcttc
aaaagagaagcacgtccaagtgatagtgaagtattaactatgagattagttgaccgtgta
ttacgtccgcttttcccagatgactatcatgctgaaacgcaagttatgattcaattaatg
agtcatgacgataatgttatgccagatgctttagctggattagcagcttctgcagcatta
gcagtttctgatattccattttacaatctaatttctgaagtacgtgtagcacgtgttaac
ggaaaatttgtaattaatccaagcagagaagaattagaacaatcagatatcgatatgatg
attggtgcttctaaagattctgttgccatggtggaaggtgaaatgaaagaaatttcagaa
gctgaaatggttgaagcaattaagtttgctcatgaagctatcaaaatccaaattgaagct
caagaaagattgagagcagcagttggttcaccagcttacagagaatatgaaccagaaaaa
gaagacgaaagcgtttatgcaaaagtaaaagcggcttcttacgataaatattatgcaatt
gctcaagaagcatctgcaaaaagcgaaagaggagaaaaatttgctgttgttaaagaagaa
gttaaagcattattcacagaagaagaatatgcagaaaatccagatttagcagaattagta
agcaaatacaactataaagttcaaaaaacagcagttcgtaacgtaattttagaaaaagga
attcgtttagacggtagaaaaacaacagatattcgtccaatttggtgtgaagttgattat
ttaccatcagttcatggttcatctatttttactcgtggggaaactcaagctttagctact
gttacattaggaacttcaagagaggcaaatgtaattgattctccatcagaacaaggggaa
gagaaattctatttacattacaacttccctcctttctcaactggtgaagcaaaaccttta
agaggaacttcaagaagagaagttggacatggtaacttagctcaaagagcattaaaaaat
atgattcctgctgattgtccttatacaattcgtgtagtttctgaagtattagaatctaac
ggttcttcttctatggctactgtttgtgctggaacaatggcattaatggattctggagtt
cagatggtaaaaccagtttctggtattgcaatgggattaattactgacggagaaaaattc
gcagtattatcagatatcttaggagatgaagatcacttaggagatatggacttcaaagta
acaggaactgcagatggtattactgcttgtcagatggatatcaaaattgatggtttacgt
tacgatattatggagcaagctttaggtcaagctagagaaggtagaatgcatattttagga
aaaatcactgaaactattgcacaacctcgtccaacagttaaaccaaaagctcctaaaatc
attactagaacaattcctggaaacttcattggtgctttaattgggccaggtggaaaagta
attcaagaattacaaaaagctactggaactactatcgtaattaacgaagttgacgagcaa
ggagtggttgaaatcttaggaactaaccaagaaggaatcgatgcggtattagcgaaaatt
gattctataattttcaaaccagaaatgggtgaagcatacgaagttaaagtaattaaaatg
ttagattttggggctgtagtagaatatactaaagcacctggaaacgaagttttattacac
gtttcagaattagcttgggaaagaactgaaaacgttactgatgtagtaaatatgggagat
gtatttatggtaaaatacttaggtattgatcctaaaacacgaaaagaaaaagtgtcaaga
aaagcacttttacctcgacctcctagagaagagaaacctatcgagaaaaaagataaacct
caaggttaa
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