Flavobacterium cyclinae: LOS86_05110
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Entry
LOS86_05110 CDS
T08416
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS86_05110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcc03019
]
LOS86_05110
03009 Ribosome biogenesis [BR:
fcc03009
]
LOS86_05110
Enzymes [BR:
fcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOS86_05110
Messenger RNA biogenesis [BR:
fcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOS86_05110
Ribosome biogenesis [BR:
fcc03009
]
Prokaryotic type
rRNA helicases
LOS86_05110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UGS22000
LinkDB
All DBs
Position
complement(1073731..1075599)
Genome browser
AA seq
622 aa
AA seq
DB search
MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFP
LIQKIDAENRNTQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYGGASITEQAREVK
RGAQIIVATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDTPDEKNT
WLFSATMPQEVARIAKQFMSNPEEITVGHKNSGSATVSHEYYVVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIHSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIHDTEVDHEIDNYLPAIYEVFQDLSKEELIKRM
VSVEFNRFLNYYKKKRDIASEKSERSSEPREIRAGDPVRYFINIGARDDFDWMQLKDFLK
ETLELGRDDVFKVDVKEGFSFFNTDGEHTEKVMETLNGYDLNGRRINVEISKNDGGSNSR
RDHNGRNSGGGRRDGGFRGERSGSAPRRDGGRDGGFRSDRNSSRKEGGFRGERSGSSSRR
EGAPRRAESAGDSSRPRRPRRS
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgagtcgctactgctggcgattaaagatcta
ggatttgaaaatccgtcagaagtgcaagaaaaagcgattccagtactattggaacaaaac
acagacttagtagccttagcgcaaacaggaacaggaaaaaccgcagcttttggttttcct
ctaattcaaaaaattgatgctgaaaacagaaatacacaggcattaattttatcgccaacg
cgtgagttatgcttacaaatcaccaacgaaattaaattgtactctaagtacattaaaggt
ttacataccgtagctgtttatggtggtgcaagcattacagaacaagctagagaagtaaaa
cgtggagctcaaattattgtagctacaccaggtagaatgcaagacatgattaacagaggt
cttgtaaacattaaaaatatcgatttttgtatcttagatgaggcagatgagatgttaaat
atgggattctacgaagatatttgttccattttatcggacacaccagacgagaaaaacact
tggttattctctgcaactatgccacaagaagttgcgcgtattgctaaacaatttatgtct
aatcctgaagaaattacagttggacataaaaattcaggttcggctactgtttctcacgaa
tattacgtggtaaacgcaagagaccgttacgaagctttaaaacgtttagcagatgctaat
ccagacattttttctgtggttttctgtagaacaaaacgtgatacacaagcagttgctgaa
aaattaatcgaagatggttataatgctgcagctttacatggtgatttatcgcaagcacaa
cgtgatggcgtaatgaaatcatttagaggtcgtcaaattcaaatgctagttgcaacagac
gttgcggctcgtggaattgacgttgataatgttactcacgtagtaaattatcaattacca
gatgaaattgaaacgtacaaccaccgttcaggaagaacaggaagagctggaaaattagga
acttcaattgtaatcgttacgaaaagtgaattgagaaaaattcactctattgaacgtatc
atcaaacaaaaatttgaagaaaaaacgattccttcaggaattgaaatctgcgaaattcag
ttattacacttagcaaacaaaattcacgatacagaagttgatcacgaaattgacaactac
ttaccggctatttatgaagttttccaagatttatctaaagaagaattgattaaaagaatg
gtttctgtagaattcaatagattcttaaactactacaaaaagaaacgcgatattgcttct
gaaaaaagtgaaagaagttctgaaccaagagaaattagagcgggtgatccagttcgttat
ttcatcaatattggtgcaagagatgatttcgattggatgcaattgaaagacttcttaaaa
gaaactttagaattaggtcgtgatgatgtatttaaagtagacgtaaaagaaggtttctct
ttctttaataccgatggcgaacatactgaaaaagtaatggaaactttaaacgggtatgat
ttaaacggtagaagaattaacgttgagatttctaaaaacgatggcggtagtaattcaaga
cgcgaccataatggaagaaattcaggtggaggaagacgtgatggtggatttagaggcgaa
agaagtggttctgcaccaagaagagatggcggaagagatggcggtttcagaagtgataga
aattcatcgagaaaagaaggtggttttagaggcgaaagaagcggatcttcatcaagaaga
gaaggcgctccaagacgtgctgaaagtgctggagattcatcaagaccaagaagaccaaga
agaagttaa
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