Flavobacterium cyclinae: LOS86_05350
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Entry
LOS86_05350 CDS
T08416
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS86_05350 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcc03021
]
LOS86_05350 (rho)
03019 Messenger RNA biogenesis [BR:
fcc03019
]
LOS86_05350 (rho)
Transcription machinery [BR:
fcc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LOS86_05350 (rho)
Messenger RNA biogenesis [BR:
fcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOS86_05350 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
UGS22048
LinkDB
All DBs
Position
1119549..1121300
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AA seq
583 aa
AA seq
DB search
MFDIEVLKEMKLSDLQEIAKVAKINKYRSLKKDDLVYMILDLQAAQPEVIKSEKTPEPTA
EKPKEKRARIAPKKDNAKPTVEKKDLFSEPVKVEEKQPEKKETEVLEAAPKTSTKSPRKD
FKNKKPLPTENKEEVTASEEKATTETIVAENTSKEKIQPKNPNHKANQNNPNHPDYKKNI
ATEGTNGTNGNTNKNQNPHQNKKPNFREPDYEFDGIIESEGVLEMMPDGYGFLRSSDYNY
LASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKYFPLVKVLKINGHDPQVVRDRIA
FDHLTPIFPKEKFNLAERSSTISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDVANAI
AANHPEVYLIVLLIDERPEEVTDMQRSVRGEVIASTFDREPQEHVKIANIVLEKAKRLVE
CGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNVENGGSLSI
IATALTETGSKMDEVIFEEFKGTGNMELQLDRRIANKRIFPAIDLVSSSTRRDDLLLDEN
TIQRMWIMRKYLADMNPVEAMDFIHDRFKKTRNNEEFLISMNE
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatattgaagtattaaaggagatgaaactctctgatttgcaagagattgcaaaa
gttgcgaaaatcaataaataccgttcgctaaaaaaagacgatttggtatatatgatttta
gatttgcaagcggcacaacctgaagttattaaatcagaaaaaactcctgaaccaacggct
gaaaagcctaaagaaaaaagagcaagaattgctcccaaaaaggataatgctaaaccaact
gtagaaaagaaagatttgttttctgaacctgtaaaagtggaagagaaacaaccagagaag
aaagaaacagaagttttagaagcggctccaaaaacaagtacaaaatcacctcgtaaagat
tttaaaaataagaagcctttacctactgaaaacaaagaagaagttactgcttctgaagaa
aaagctacaactgaaaccatagtagccgaaaacacctcaaaagaaaagattcagcctaaa
aatccaaatcataaagcgaatcaaaataatcccaaccatcctgattacaaaaagaatatt
gctactgaaggaacaaatggtacaaatgggaatactaataaaaatcagaacccacatcag
aataaaaaaccaaatttcagagaacctgattatgagttcgacggaattatcgaaagtgaa
ggtgttttagaaatgatgccggatggttacggttttttacgttcgtctgattacaactat
ttagcatctccagatgatatttatttgtcaacttctcaaattcgtttgttcggattaaaa
acgggtgatacagtaaaaggagtagtgcgtcctccaaaagaaggagaaaaatatttccca
ttggtaaaagtattgaaaatcaacggtcatgacccacaagtcgtgcgtgatagaattgct
tttgatcatttaacgccaattttcccaaaagaaaaattcaatttagcagaacgtagtagt
actatttcaactcgtattattgatttgttttcgccaattggaaaaggacaacgtggtatg
attgtagcccaaccaaaaacgggtaaaacgatgttgttaaaagatgttgcgaatgctatt
gctgcgaatcatcctgaagtttatttaattgtattattgattgatgaacgtccagaagag
gtaacagatatgcaacgtagcgtacgtggtgaagtaattgcttctactttcgatagagaa
ccacaagagcacgttaagattgccaatattgttttagaaaaagcaaaacgtttagtagaa
tgtggtcacgatgtagtgatattattagactcgattactcgtttagcaagagcttacaat
acggtacaaccagcatctggaaaagtattgagtggtggtgttgatgcaaatgcgttacaa
aaaccaaaacgtttctttggagcggctcgtaatgtagaaaatggaggttcgttaagtatc
attgcaaccgcattaacagaaaccggttctaaaatggacgaagttatcttcgaagaattc
aaaggaacaggtaacatggaattacagttggacagaagaattgccaacaaacgtattttc
cctgcaatcgacttggtttcttcaagtacgcgtcgtgatgacttattattagatgaaaat
accattcaaagaatgtggattatgcgcaaatatttagccgatatgaacccagtagaagct
atggatttcatccacgaccgtttcaagaaaaccagaaacaacgaagaattcttaatttcg
atgaatgaataa
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