Flavobacterium cyclinae: LOS86_06155
Help
Entry
LOS86_06155 CDS
T08416
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS86_06155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcc03019
]
LOS86_06155
Enzymes [BR:
fcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOS86_06155
Messenger RNA biogenesis [BR:
fcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOS86_06155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
PTPS
Motif
Other DBs
NCBI-ProteinID:
UGS22203
LinkDB
All DBs
Position
complement(1297310..1298563)
Genome browser
AA seq
417 aa
AA seq
DB search
MTFNELKLFNNIQQALEEEGYTNPTPIQEQAIPEILAGQDLVACAQTGTGKTGAFAIPIL
NLIHRIVGSAKKTKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVN
ELKMGVDVLIATPGRFLDLHKQGFIDLNHMHHLVLDEADQMLDMGFINDVKKIIKLTPEN
RQTLLFSATMPLAIRELADTFLTRPKYISVTPISSTAENVSQKVYLVNKDEKRLLLKQLI
LEENITNALVFTRTKHGADNIVKVLKKAEIKAEAIHGDKSQNARQRVLEQFKNKEIDILV
ATDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAISFCGKDEKTYWQDI
EKLIRMKVKVITGHSYEWKDEVKNPDAKPDLRNKNKKNPNSKSRKSDASKKNKKRWY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacctttaacgaattaaaattatttaacaatatacaacaagctttagaagaagaaggc
tacactaaccctactcctattcaagagcaagcgattcctgaaatattagccggacaagat
ttagtggcatgtgcccaaactggaactggtaaaacaggtgcttttgccattcctatttta
aatttaatccaccgaattgttggttcagcaaaaaaaacaaaacatattcgaactttagta
gttacaccaacaagagaattggccatacaaattgacgagagttttaaaacctatggaaaa
tataccaatgtaaaatcgttagtgatttttggaggtgtaaaccaagtaccacaagtaaat
gaattgaaaatgggggttgatgttttaatagcaactccaggacgctttttagatttacac
aaacaaggttttatcgatttgaatcacatgcatcatttggttttagatgaagccgatcaa
atgttagatatgggttttattaatgacgtaaagaaaatcattaaattaacaccagaaaat
cgtcaaacgttattgttttctgcaacaatgccattagctatcagagaattagcagatact
tttttaaccagaccaaaatacatttcagtaacaccaatatcaagtacggctgaaaatgta
tcgcaaaaagtttatttggtaaataaagacgaaaaacgtttgttgttaaaacaacttatt
ttagaagaaaatatcactaatgctttagttttcactagaacaaaacatggagctgataat
attgtaaaagttctaaaaaaagcagaaatcaaagcggaagctattcacggagataaatca
caaaatgcacgtcaacgtgttttagagcaatttaaaaataaagaaattgatattttagtt
gctaccgatattgcggcaagaggaatagacattgaacaactaccctttgtaattaacttt
gatattccaaacatttctgaaacctacgtacaccgaattggtcgtactggtcgagctgga
aattctggtttagcaatatctttctgtggaaaagacgaaaaaacatattggcaagatatt
gaaaagttaattcgaatgaaagttaaggttatcaccggacattcgtatgaatggaaagac
gaagttaaaaatccagatgcaaaacctgatttaagaaacaaaaacaagaaaaatcccaat
tcaaaatcaagaaaatcggatgcttctaagaaaaacaaaaaacgctggtattaa
DBGET
integrated database retrieval system
