Flavobacterium cyclinae: LOS86_09165
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Entry
LOS86_09165 CDS
T08416
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03030
DNA replication
fcc03430
Mismatch repair
fcc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOS86_09165
03430 Mismatch repair
LOS86_09165
03440 Homologous recombination
LOS86_09165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcc03032
]
LOS86_09165
03400 DNA repair and recombination proteins [BR:
fcc03400
]
LOS86_09165
Enzymes [BR:
fcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOS86_09165
DNA replication proteins [BR:
fcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOS86_09165
DNA repair and recombination proteins [BR:
fcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOS86_09165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
RNase_H_2
GIY_YIG_2
DNA_pol_A_exo1
Rv2179c-like
T5orf172
DUF7508
Motif
Other DBs
NCBI-ProteinID:
UGS20190
LinkDB
All DBs
Position
1954598..1955959
Genome browser
AA seq
453 aa
AA seq
DB search
MYAIIDIETTGGQYNEEGITEIAIYKFDGHEVVDQFISLVNPEKPIQPFVVKLTGINNAM
LRSAPKFYEVAKRIIEITEGCVIVAHNASFDYRILKTEFRRLGFDFKKQTLCTVELAKKL
IPGQESYSLGKLVRSLGIPMADRHRASGDALATVKLFKMLLVKDIEKEIVKSFIKTEIKS
GMSPKLLDIVENLPSKTGIYYIHNEKGDLIYIGKSKNIKKRVNQHFTGTSSKSKKIQRDV
FAVTFEETGSELIALLKESEEIKINKPIYNRAQRKSIFQYALYQHTNEQGYISLTVEKAD
GRKKEITSFTSLQEGKNALFKITEKYNLCQKINGLYDTQNGCFQYKIKECNGACLGEENP
ESYNERVLEFIEENSFENNNMVILDRGRTYDERTAVLIENGIYKGYCFYDLNYQVNNIEI
LKNIIIPMQHNRDTKTIIQSYIRKNKVYKIIRF
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgcaataatcgacatagaaaccactggaggacaatacaatgaagaaggtataacc
gaaatcgccatttataaatttgatggtcatgaggttgtggaccaattcattagccttgta
aatcccgaaaaaccaatccaacctttcgttgtgaagttaactgggattaataatgctatg
cttagaagtgctcccaaattctatgaagtggcaaaaagaattatcgaaatcactgaagga
tgtgtaattgtggctcacaatgcttcattcgattatcgaattttaaaaaccgaatttaga
cgtttaggttttgatttcaaaaaacaaacgctatgtacggtagaattagcaaaaaagtta
attccgggtcaagaatcgtatagtttgggtaagctggtgcgttcattaggaattcctatg
gcagacagacatcgtgctagtggtgatgctttggctactgtgaaattattcaaaatgttg
ttggtaaaagacatcgagaaagaaatcgtaaaaagctttatcaaaaccgaaattaaatcg
ggaatgtctccgaaattgttagatattgtggagaatttaccttcaaaaacaggtatttac
tacattcacaatgaaaaaggcgatttgatttacatcgggaaaagcaaaaacatcaaaaaa
cgtgtcaaccaacatttcacaggaacttcgagtaaaagtaaaaaaatccaacgtgatgtt
tttgccgtgacttttgaagaaacgggaagcgaattaatagcacttttaaaggaaagcgaa
gaaattaaaatcaataaaccaatttacaacagagctcaacgcaaaagtatttttcaatac
gcgctttaccaacacacaaacgaacaaggttacatttcattaaccgttgaaaaagcagat
ggtcgaaagaaagaaatcacttcgtttacttcgcttcaggaaggcaaaaatgcattgttc
aagataacagaaaaatacaatttgtgtcagaaaatcaatggtttgtatgatactcaaaac
ggatgttttcaatacaaaataaaagaatgtaatggagcttgtttgggtgaagaaaaccct
gaaagttacaacgaaagagttttggaattcattgaagagaactcgtttgaaaacaacaat
atggtaattcttgatcgcggtagaacgtatgatgaaagaactgctgtattaattgaaaat
ggtatatataaaggctactgcttttacgatttgaattatcaagtgaataacattgaaatt
ttgaaaaacatcatcattccaatgcaacacaatcgcgatacaaaaacgattattcaatct
tatattagaaaaaataaagtgtataaaataattcgtttttaa
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