Flavobacterium cyclinae: LOS86_10940
Help
Entry
LOS86_10940 CDS
T08416
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS86_10940 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcc03019
]
LOS86_10940 (recQ)
03400 DNA repair and recombination proteins [BR:
fcc03400
]
LOS86_10940 (recQ)
Enzymes [BR:
fcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOS86_10940 (recQ)
Messenger RNA biogenesis [BR:
fcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOS86_10940 (recQ)
DNA repair and recombination proteins [BR:
fcc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOS86_10940 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
DUF730
Motif
Other DBs
NCBI-ProteinID:
UGS20531
LinkDB
All DBs
Position
complement(2350897..2353092)
Genome browser
AA seq
731 aa
AA seq
DB search
MNPNEIDLHKELKRYFGFNQFKGLQEQVVKSIITGNNTFVIMPTGGGKSLCYQLPALVLD
GTAIVVSPLIALMKNQVDAIRSLSSEPGIAHVLNSSLNKTEVNQVKKDITSGITKLLYVA
PESLTKEEYIEFLNSVKLSFVAIDEAHCISEWGHDFRPEYRNLRNIVRQLGDVPMIGLTA
TATPKVQEDILKNLDMPDANTFKASFNRPNLYYEVRTKTKNVESDIIRFIKQHKGKSGVI
YCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMGID
KPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFLSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFDDVNGEGADMDDNVRNPKKKVEAQDQVVT
LLKVVQETKQLFKSKEVVLALVGKINAVIKAQKIDALPCFGSGASFDEKYWMALIRQVLV
SGLLTKDIETYGVLKMAKKGEEFLKKPESFMMSEDHEYNEEEDEAIVTAAKSSGTADEAL
MAMLRDLRKKEAKKLGVPPFVIFQDPSLEDMALKYPISIDELSNVHGVGEGKAKKYGKPF
VDLISRYVEDNDIIRPDDLVVKSTGANSGLKLYIIQNVDRKLGLDDIAKAKGLDMDGLLK
EMEQIVYSGTKLNIKYWIDEILDEDQQEEIHDYFMESESDKIDLALKEFDGDYDTEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaaacgaaattgatttacataaagaattaaagagatattttggttttaaccaa
ttcaaaggtcttcaagaacaagtggttaaaagtatcattaccggaaataatacttttgta
attatgccaacaggcggtggtaagtcactttgttatcaattgccagcattagtgttagac
ggaactgcaattgtggtttctccattaattgccttaatgaaaaaccaagtagacgcaata
cgaagcttgagttctgaacccggtattgctcatgttttgaactcttcgttaaataaaaca
gaagttaatcaggtaaaaaaagacattacttctggtattacgaaattgttatatgttgct
ccagaatctctaacaaaagaagaatatattgagtttttaaatagtgtaaaactatctttt
gttgctatagacgaagcccattgtatttcagaatggggacatgatttccgtccagaatat
cgtaatctaagaaatatagtgcgccaattaggtgatgtgcctatgattggtttaaccgca
acagcaactccaaaagttcaagaagatatcttgaaaaacttggacatgccagatgccaat
acattcaaagcatcatttaaccgtcccaacttatattacgaagtacgtacaaaaactaaa
aatgtagaatcggatattattcgattcatcaaacaacataaaggaaaatcaggtgtaatt
tactgtttgagccgtaaaaaagtggaagaaattgcccaagttttacaggttaatggtatt
agtgctgttccatatcatgcgggtttagatgctaaaacacgtgccaaacatcaagatatg
tttttgatggaggatgttgaggttgtagtggcaactatagcctttggtatgggaatcgat
aaacccgatgttcgttatgtaattcaccatgatattccaaaatctttagaaagttactac
caagaaacaggtcgtgctggtcgtgatggtggtgaaggacattgtttagcatactattcc
tataaagatattgagaagttagaaaaattcctctctggaaaaccggttgcggaacaagaa
atcggttttgctttgttacaagaagtggtagcgtatgctgaaacttctatgtctcgtcgt
aaattcttattgcattattttggtgaagaattcgacgatgtaaacggtgaaggggcagac
atggatgacaacgttcgtaatccgaagaagaaagttgaagcgcaagaccaagtggttact
ttattaaaggtagttcaagaaaccaagcaattatttaaatctaaagaagtggttttagcg
ttagttggcaaaattaatgcggttataaaagctcaaaagattgatgctctaccttgtttt
ggatcaggtgcctcttttgatgagaaatattggatggctttaattcgacaagttttagtg
tcaggattgctaacaaaagatattgaaacgtatggcgttttgaaaatggctaaaaaagga
gaagagttccttaaaaagccagaatcttttatgatgtcagaagatcatgaatacaatgag
gaagaagatgaagcgattgtaactgcagcaaaatcttctggaacagcagacgaagcctta
atggctatgttacgtgatttacgtaagaaagaagctaaaaaattaggtgtgcctccattt
gttattttccaagatccttctttggaagatatggcgttgaaatatccaatttctattgat
gagttgagtaatgtgcacggagtaggagaagggaaagccaaaaaatatggaaagccattt
gttgatttgatcagtcgatatgttgaagataacgatattattcgtccagatgatttagta
gtgaaatcaactggggctaattctggattgaagttgtatatcattcagaatgtagataga
aagttgggattagatgacatcgctaaagcaaaagggttagatatggatggtttgttgaaa
gagatggaacaaattgtttattcgggaaccaaattgaatatcaaatattggattgacgaa
attttagatgaagaccaacaagaagaaattcacgattatttcatggaatccgaatcggat
aaaattgatttggcgttgaaagaattcgacggtgattacgatactgaagaattacgtttg
atgcgaattaaatttattagcgaagtagcgaattaa
DBGET
integrated database retrieval system
