Folsomia candida: 110844059
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Entry
110844059 CDS
T05043
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
fcd
Folsomia candida
Pathway
fcd03008
Ribosome biogenesis in eukaryotes
fcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110844059
09123 Folding, sorting and degradation
03018 RNA degradation
110844059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcd03021
]
110844059
03019 Messenger RNA biogenesis [BR:
fcd03019
]
110844059
03009 Ribosome biogenesis [BR:
fcd03009
]
110844059
03016 Transfer RNA biogenesis [BR:
fcd03016
]
110844059
Transcription machinery [BR:
fcd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110844059
Messenger RNA biogenesis [BR:
fcd03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110844059
Ribosome biogenesis [BR:
fcd03009
]
Eukaryotic type
Pre-60S particles
RNases
110844059
Transfer RNA biogenesis [BR:
fcd03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110844059
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
110844059
NCBI-ProteinID:
XP_021945864
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MGVPAFFRWLTKKYPSVIVHCIEEKNATIDGTDVPLDTSAPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFECIDRLFRIVRPRKVLYMAIDGVAPRAKMNQQRSRRFR
ASKETSEKIKEIDRVREELISRGCEVPPAKEKGEHFDSNCITPGTPFMDRLSKCLHYYIH
DRLNNDPGWRNVKVFLSDANVPGEGEHKIMDFIRRQRAQPDHDPNTAHVLCGADADLIML
GLASHEPNFTIIREEFKPNKPRPCDICGQIGHEMKDCLGLEKEVCGEHDEIAAPFASEVE
FIFVRLNVLREYLEKELHMPNLPFPFELERAIDDWVFMCFFVGNDFLPHLPSLEIRENAI
DRLVELYKKTVYKTGGWLSDSGIPDLSRVQLILSDLGEVEDEIFKNRQQNELRFKDRMKA
QKRRKQMEQQANSNCYSRPAYLPGGQFAPMAIGSSPSAIHEAKNEAYNMRRQGMHTNVDS
ATSKSNTAAAAALKSMLQESPKSDSGRDDSFNSSGSSFSPSPSPSPNSSPYHQGVKRPHA
DDSDEETNDEVRLWEDGFKDRYYESKFDVAVDNFKFRNEVASQYVRGLCWVLRYYYQGCA
SWKWYFPYHYAPFASDFINVGDLSTEFEKATQPFKPLEQLMGVFPAASRSHVPAPWGELM
LDPESSIIDFYPEDFQIDLNGKKFAWQGVALLPFVDELRLKQALESCYDLLTDDEIKRNV
RGDDRLYVYKNHQGFEFLNGLYENEFDPKTETPLDPKQFDGVSGMVLVSEDRIPQKGQLR
SPINGLLDIDENYVVCARYRDPKYAEDYIFPAKRLDGARDPPKVLKPGDLTPDQSRNWRP
MIGMTHSTQRASLGMAGHRMMANEGYSRDRRGGGQGQYSNMPPPNASGPYRSDRSFHQNR
YQPYNYNDRRGGGGGGGGHYNQRDGGSWNNLGRGGHMPRGGGGGGGYSNSYSNNQGSNYG
RYDGNSGYSRDNGGRSYPSQQAGGYGAQQGRPPSYYNHNGGSASASQNRRGDRYDRGNER
GRR
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattttttaggtggcttactaaaaagtacccttcagttattgtacac
tgcattgaagaaaagaatgctacaattgatggcactgatgttcctctggacacatcagcc
cctaatccaaacggggtcgaattcgataatttgtacctggatatgaacgggattattcat
ccatgcactcatcccgaagataaaccagcgccgaaaaatgaagacgagatgatggttgct
atttttgaatgcattgatcgtctatttcgaattgttcggccacgaaaagttttgtatatg
gcgattgatggagtggctcctagagcgaaaatgaatcagcagcgatctcggcgtttccgt
gcttcaaaggaaacgagtgaaaaaataaaggaaatagatcgggttcgagaagaattgatt
tccagggggtgcgaggttcctccagcaaaggaaaaaggagaacattttgacagcaattgc
attactccgggaacgccatttatggaccgactgtccaaatgtcttcattattacattcat
gatcgtctgaataatgatcctggctggaggaacgtgaaggtgtttttatctgatgcaaat
gtccccggtgaaggtgaacacaaaataatggattttatccggagacaaagagctcagcct
gaccatgaccccaatactgcacacgttctgtgtggagctgatgcagatcttataatgtta
ggattagcatctcacgaaccaaatttcacaattatccgagaagaatttaagccaaataag
ccacgcccttgtgacatctgcggtcaaattggacatgaaatgaaggattgtctaggattg
gagaaagaagtttgcggtgaacatgatgaaatagccgctccgtttgcttcggaagttgaa
tttattttcgtccgccttaacgttcttcgggaatacttggaaaaggagcttcatatgcca
aatttgccatttccttttgagttggaacgagcaattgatgattgggtattcatgtgtttc
tttgttggaaatgatttcttgccacatcttccatcgcttgaaattcgtgaaaatgcaatt
gacaggctcgttgaactgtacaagaaaacggtttataaaactggaggatggctgtctgat
agtggaattccagacctgtcgcgagttcaacttattctttctgaccttggagaagttgaa
gatgaaatatttaaaaatcgtcagcaaaatgaactccgatttaaagatagaatgaaggcc
cagaaacgtaggaagcaaatggagcaacaggcaaattcaaactgttattctagaccagcg
tatcttcctggtggtcaatttgcgccaatggcaattggaagcagtccttctgctattcat
gaagcaaagaatgaagcttataacatgcggcgtcaaggaatgcacaccaacgtagacagt
gcgacctcgaaatcgaacactgcggctgctgctgcactaaagtccatgttgcaagaatcc
ccaaagtctgattctggccgagatgacagcttcaactcttctgggtccagctttagcccg
agtccaagtcctagcccaaattcaagtccttaccatcaaggtgtaaaaagacctcatgct
gatgattccgacgaggaaacgaatgatgaagttcgactgtgggaagacgggtttaaagac
cgttattacgagtcaaagtttgatgttgcagtagataatttcaaatttcgaaacgaagtg
gcttcacaatatgtccgaggactgtgttgggtgttacgttactattatcagggttgcgca
tcatggaagtggtattttccgtaccactatgcaccttttgcatccgactttataaatgtt
ggtgacctttcaacagaatttgaaaaggctacgcaaccatttaagcctttggagcaattg
atgggcgtatttccagctgcgagccgatcacatgttccggctccatggggcgaattaatg
ttagatccggaatcatcaatcattgacttttatccagaggattttcagatagatttgaat
gggaaaaaatttgcatggcaaggagttgctctactaccattcgtcgatgaactgaggcta
aaacaggcccttgaatcttgctatgacctgctcaccgatgatgaaataaaacgcaatgtt
cgaggtgatgatcggttgtacgtgtacaaaaaccatcaaggatttgagtttttaaacggg
ttatatgaaaatgagtttgatccaaaaaccgaaacccctcttgacccaaaacaatttgac
ggcgtttctggaatggttctggtttccgaggataggattccacaaaaagggcagttgagg
tcccctataaacggtttgctagacatagatgaaaattatgttgtctgtgcgagataccga
gatccaaagtatgcagaagactacatattcccagccaagcgtttggacggagccagggat
ccaccaaaagtactaaagcctggtgacctaactcctgatcaatctcggaactggagacct
atgattggaatgacccattctacacaacgagcatcgttgggaatggcgggtcacagaatg
atggcaaatgaaggatattctcgtgaccgaaggggtggaggtcaaggtcaatatagcaac
atgccaccacccaatgcttccgggccatatagatcagatcgatcctttcatcaaaatcga
tatcaaccatacaactataatgaccgacgaggaggaggaggtggaggaggcggccactac
aaccaacgagatggaggctcatggaacaatttgggaagaggtggtcacatgcctcgcgga
ggaggaggaggaggtggttactctaattcctattcgaataatcaagggtcgaattacggt
cgttacgatggaaactctgggtattctagagacaacggtggtagaagctatccgtcacaa
caggctggtggctacggtgcacaacaaggacgaccaccatcgtactataaccacaacgga
ggttcagcctcagccagtcagaataggaggggggatcgctacgatcgtggcaatgaacga
gggcggcgttaa
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integrated database retrieval system
