Folsomia candida: 110847776
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Entry
110847776 CDS
T05043
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fcd
Folsomia candida
Pathway
fcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110847776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcd03019
]
110847776
03041 Spliceosome [BR:
fcd03041
]
110847776
03009 Ribosome biogenesis [BR:
fcd03009
]
110847776
03016 Transfer RNA biogenesis [BR:
fcd03016
]
110847776
Enzymes [BR:
fcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110847776
Messenger RNA biogenesis [BR:
fcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110847776
Spliceosome [BR:
fcd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110847776
Complex C
U4/U6.U5 tri-SnRNP related factors
110847776
Ribosome biogenesis [BR:
fcd03009
]
Eukaryotic type
Pre-60S particles
Helicases
110847776
Transfer RNA biogenesis [BR:
fcd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110847776
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110847776
NCBI-ProteinID:
XP_021950463
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MEDDLFGAELFDVFDNKTLAPSSTKKDEDRDEDDNEDEDGLQYVSASKVTKEKEDENKKD
ANEAVDVQNIHEDEPDEVAALKEVASTSKKVDAPNNQETGTTSTTTAQATGATKRTLENE
EKTDEDEEKAVEIDQDAEYMDTTEDGVSVKRRKTMSDIEALQKYLPQVELKTLETLDGGG
CSHVVAIPSNSYYIPLEPIGKPVKTYPFTLDTFQQRAVQCVDNYQSVLISAHTSAGKTVV
AEYAIAKALKDNQRVIYTTPIKALSNQKYREFYEEFKDVGLITGDVTISPSASCLIMTTE
ILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETIILLPHKTHYVFLSATIPNAI
QFAEWICHLHKQPCNVIHTEYRPVPLHHYIYPVGGDGIHLVVDDQGTFREDGFNSAMGMI
QNTEGGGGQGGRGRGRQGKGEDSPCHKVIKMAMEHDLAPVIVFSFSKKDCEIYALQLSKL
DFNTGEDKQLVEEVFTNAIDVLSKEDQKLPQVENLLPLLKRGIGIHHGGLLPLLKETIEI
LFSEGLIKVLFATETFAMGLNMPARTVLFTNVRKFDGKNYRWISSGEYIQMSGRAGRRGI
DDKGVTIVMIDEKISPSVGRSLFKGAADPINSAFHLTYNMVLNLMRVEEINPEYMMERSF
FQFQNYSNIPDICKKLLDAETAYKNMTVPREEEVASYYDLRKQLNIFSEDFRSYITRPTY
VVPFLQAGRLVFVKNKETEFGWGAIVNFQKKENTRENPLNSTPTYVVDVLLHVNFVQGVD
GSPGEIKPIGIGEKGEMKVIPIALGVINKISQVRLYMSNDLRPLENRMAVLKGIEEVNKR
FNNEIPLLDPIKDMRINNKGFTDLLENIKQFEQRLSKHPLNEDPDVANLYETYHEKVKLH
QEVSLAKVDLKKAKSLLQMDELKCRKRVLRRLGYASADDVIDIKGRVACELTSGDELLLT
EMIFNGLFMDLDVPKTVALLSCLVCDERSNDVPKLSEELSGPLKMMQDMARQIAKVSKES
KLEIDEDEYVDQFKPFLMDVVFEWCKGATFSKLCEMTDIFEGGIIRCMRRLEELLRQMSL
AAKVIGNKELEEKFNDGVKLIKRDIVFAASLYL
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgatcttttcggtgcagagttgtttgacgtattcgacaacaaaacactagcc
ccttcatcgaccaaaaaagatgaggatcgggacgaggatgacaatgaagacgaggatggg
ctgcagtatgttagcgcgtcaaaagttactaaagaaaaggaggacgaaaacaaaaaggat
gcaaacgaagcagtggatgtccagaatattcatgaagatgagccagatgaagttgcagcg
ttgaaggaagttgcatcaacaagtaaaaaagttgatgcgccaaacaaccaagaaactggt
acaacttccacgaccactgctcaagccactggtgcgactaagagaacattagaaaatgaa
gaaaaaactgatgaggatgaagaaaaagctgtggagattgatcaagacgctgagtatatg
gatacgacggaagacggtgtatcagttaaacgtcgtaagaccatgagtgacattgaagca
cttcaaaaatatcttccccaagttgaattgaagactttggaaacgttggatggaggaggg
tgctctcatgtggttgccatcccgtcaaattcatactatattcctttagaacctattgga
aagcctgtgaaaacgtatcctttcactttggatacttttcaacaaagagctgtccagtgt
gtggataattaccaatctgttttgatatctgctcatacttctgctgggaaaactgttgtc
gcagaatatgcaattgctaaagcgttaaaagataatcaacgagttatttacacaacaccc
atcaaagcgttgagtaatcagaagtatcgagagttttatgaagagtttaaagatgttgga
cttattactggcgacgttacaatcagcccatcagcaagttgtttgattatgacaactgag
attctccgaaatatgttataccgaggttccgaaatcatgcgggaggttggatgggttgtt
tttgacgaaattcattacatgagagataaggaaagaggggttgtatgggaggaaactatc
atcttgctaccacataaaacccattatgtatttttgtctgcaaccattccaaatgcaatt
cagtttgcagagtggatttgtcatttgcacaaacagccttgcaacgttattcacacggaa
tatcgacctgtccccttgcatcattatatttatccagttggaggagatgggattcatttg
gtagtggatgatcaggggacatttcgagaggatgggtttaacagtgcaatgggtatgatt
caaaatactgaaggtggaggaggtcaaggtggccgagggcggggacgacaaggcaaagga
gaagattctccatgccacaaagttattaagatggcaatggaacatgacttggctcccgtt
attgtgttcagctttagtaaaaaagattgcgaaatatatgccttgcaattgtcaaaattg
gatttcaatacgggagaggacaagcaattggtcgaagaagttttcacaaatgcaattgat
gttctctcaaaagaagatcaaaagttgcctcaggtagaaaatctactccctttgctgaaa
cgtgggattggtatccatcatggtggtttactacccctgttaaaagaaactattgaaatt
cttttctccgagggacttatcaaagttctatttgcaaccgagactttcgctatgggtttg
aacatgccagcaagaactgtacttttcacaaatgtacgaaaatttgatgggaaaaactat
cgatggatttcttctggagagtatattcaaatgtctgggagagcagggcgtcgtggaata
gatgacaaaggggtcacaatagtcatgattgacgaaaaaattagccccagcgttggacgg
tctctgtttaaaggagctgccgacccaatcaactctgcttttcatcttacgtacaatatg
gtcttaaacttgatgcgggtggaagaaattaatcctgaatacatgatggaaaggagtttc
ttccaattccaaaattactcaaatattccagatatatgcaaaaagcttttggatgctgaa
acagcgtacaaaaatatgacagttccacgtgaagaagaagtggcttcatattacgatctc
aggaaacaactaaatatattttccgaagattttcgttcatatataactcgcccaacatat
gtagttcccttcttgcaagcagggcgtttagtatttgtgaaaaacaaagaaacagaattt
ggttggggtgctatcgtcaattttcaaaagaaggaaaacactcgagaaaatcccttgaac
tcgactccaacatatgttgttgatgttctgctgcacgtaaactttgtacaaggagttgat
gggtctccaggagaaattaaacccattgggataggagagaaaggggaaatgaaagtaatt
cctattgcactgggcgtcatcaacaaaattagtcaagtcaggctgtatatgtcaaacgat
ctgagacccttggaaaacagaatggctgtgctgaaaggaattgaagaagtcaataagcga
ttcaacaacgagatcccattgttggatccaatcaaagatatgcgtatcaacaacaaaggt
ttcactgatctgctggaaaacattaagcaatttgagcaacgactttcaaagcatcccctt
aatgaggacccagatgtcgcgaacctgtacgaaacataccacgaaaaagtcaaacttcat
caagaggtttcattggctaaggtggatttgaaaaaggcgaaatctctactacaaatggat
gaattaaaatgtagaaagcgggttctccgccgtctaggatatgcttcggccgatgacgtt
attgacataaaaggtcgagtagcgtgtgaattaacgagtggagatgagctcttactgaca
gaaatgatattcaatggcttatttatggacttggacgttccaaaaactgtcgcattgctc
agttgtctggtgtgcgatgaacgcagtaatgatgtcccaaaactttcagaagaactatct
ggaccactgaaaatgatgcaggatatggcaagacaaatagctaaggtcagcaaggagtca
aaacttgaaattgatgaggacgagtatgtggaccagtttaagccatttttaatggacgta
gtctttgagtggtgtaagggagcaactttttctaaactatgcgaaatgactgacatattt
gaaggtgggattattcgctgcatgagaagattggaagagttattgcgacaaatgtcgcta
gctgccaaagtgatcggcaacaaagagttggaagagaaattcaatgatggtgtgaaactt
ataaaacgcgacattgtatttgctgcaagtttgtatttgtaa
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integrated database retrieval system
