Folsomia candida: 110852845
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Entry
110852845 CDS
T05043
Name
(RefSeq) ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
fcd
Folsomia candida
Pathway
fcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110852845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcd03019
]
110852845
03036 Chromosome and associated proteins [BR:
fcd03036
]
110852845
Enzymes [BR:
fcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110852845
Messenger RNA biogenesis [BR:
fcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110852845
mRNA degradation factors
5'-3' decay
Decapping complex
110852845
Chromosome and associated proteins [BR:
fcd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110852845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
DS
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110852845
NCBI-ProteinID:
XP_021956660
LinkDB
All DBs
Position
Unknown
AA seq
458 aa
AA seq
DB search
MSTAVVTNNGVVDADLAAALKAKMMLSSENNGGGGGGDWKAQLNLPPKDNRMRTSDVTDR
EGKEFEDFCLTRELLMGIFEMGWEKPSPIQEASIPMALSGRDILARAKNGTGKTGAYSIP
LLERIDPTLDAIQGLIVVPTRELALQVSQICTDLAKHLQVKVMVTTGGTGLKDDIIRVYQ
KVHVIIATPGRIIDLMEKNVCKMDQCKMLVLDEADKLLSQDFNRMLDKLISFLPNKRQIL
LFSATFPITVESFMKKHAIDPYKINLMDELTLKGVTQYYAFVQERQKVHCLNTLFSKLEI
NQSIIFCNSTQRVELLAKKITDLGYACYYIHARMNQADRNRVFHDFRKGHCRNLVCSDLF
TRGIDIQAVNVVINFDFPKMSETYLHRIGRSGRYGHLGIAINLITYEDRFNLQKIEAELG
TEIKPIPKEIDKALYVASFHQDGEEHGEGNNKEQNHAK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagccgtggtgacaaataacggggtggtcgatgcggatttggcggcggctctg
aaagcgaaaatgatgctgtcctcggaaaacaatggaggcggagggggaggagattggaaa
gcgcagttaaatctacccccaaaagataataggatgcggactagtgatgtcacggatagg
gaggggaaggaatttgaagatttttgcttgacgagggagcttttgatgggaattttcgaa
atgggatgggagaaaccatccccaattcaagaggcgtcgatccctatggcgctctcaggt
cgggatattttggccagggcgaaaaatggaacaggaaagacgggggcgtattctattccc
ctcctggaaaggattgatcccactttagatgcaattcagggtctgatagtcgtccctacg
agagaactggcgctacaagtaagccagatttgtactgatttggccaagcatctccaagtc
aaggtcatggtcacaaccggaggaactggattgaaggacgatatcatccgggtctaccag
aaagttcacgtgataatcgcgactccagggagaataatcgatttaatggagaagaatgta
tgcaagatggaccagtgcaaaatgttggttttggacgaggcggataagctcttatcacaa
gactttaatcggatgttggataagctcatctcattcctgcccaacaagaggcaaattctc
ctcttttctgctaccttccctatcacggttgaatcatttatgaaaaagcacgcaatcgac
ccgtacaagattaacttgatggacgagctgacgctgaagggggtgacacaatactacgcc
ttcgtccaggaacgtcaaaaggtccactgtttgaacacgctcttttctaaattggaaatc
aaccagtccatcattttctgcaactcgacccagcgcgttgaactcctcgccaagaagatt
accgacctgggttacgcctgttactacattcacgcccggatgaaccaagccgatagaaat
cgagtatttcacgactttaggaaaggtcactgtcgcaacctcgtctgctcggacctgttc
acgcgaggtatcgacatccaagctgtgaatgtggtgataaactttgactttcccaagatg
agcgagacctatttgcaccgaattgggcgatccgggcgatatggccacttggggattgcc
atcaaccttatcacttatgaggacaggttcaaccttcaaaagatcgaggccgaacttgga
acggagatcaagcccattccaaaggaaatcgacaaggccctttacgtcgcctccttccac
caggacggtgaggaacacggcgaagggaacaacaaggaacaaaaccacgcaaaatga
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