Folsomia candida: 110856304
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Entry
110856304 CDS
T05043
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
fcd
Folsomia candida
Pathway
fcd03020
RNA polymerase
fcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110856304
09124 Replication and repair
03420 Nucleotide excision repair
110856304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcd03021
]
110856304
03400 DNA repair and recombination proteins [BR:
fcd03400
]
110856304
Enzymes [BR:
fcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110856304
Transcription machinery [BR:
fcd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110856304
DNA repair and recombination proteins [BR:
fcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110856304
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
110856304
NCBI-ProteinID:
XP_021960480
LinkDB
All DBs
Position
Unknown
AA seq
1867 aa
AA seq
DB search
MSEVSDLRIPLRTVKKVQFGILSPDEIRRMSVTEGGIRFTEITEGGRPKLCGLMDPRQGV
IDRNSRCLTCTGTQTECPGHFGHIDLAKPVYHPGFLGKTVKVLRCVCFYCSKMLVSPTHP
KMREVVAKTKGQPRRRIDFVYELCKKKSICDGGDEMDGNQGEEDPNITSKKSGHGGCGRF
QPNIRKVGLELFAEWKNVNEADQEKKMAVTAERVLEILKHISDEESLVMGMDPKWSRPDW
MIYSVLPVPPLPVRPAVVTFGSARNQDDLTHKLADIVKANNELLRNDQSGAAAHIIAENV
KMLQFHVATLTDNEIPGLPRAMQTSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNMDKMTELVARGNNQYPGAKYIIRSNGDRI
DLRFHPKSSDLHLQLGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTTPYNADFDGDEMNLHVPQSMETRAEVENLHITTRQIITPQANKPVMGIVQDTLTGAKK
MTKRDVFLTKEQMMNLLMFLPIWDGRMPMPAIVKPIPLWTGKQLFTLIIPGNVNLVKTHA
THPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSEGSLLHICFTELGHEVAGQ
FYGNIQTVVNNWLMYEGHSIGIGDTIADPQTYLEIQRTIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKTMVVAGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
VDTAIKTAETGYIQRRLIKAMESVMVDYDGTVRNSTGQLIQLRYGEDGLAAENVEHQTLP
TVKLSNSAFEERFRFDPTNERYLRKVFDEEVMREIVGSAEVLSAVEKEWKTLKADRATMR
EIFPSGESHVVLPCNLKRMIWNVQKIFHIDKRLPVDLNPIRVIEGVENLLKKCVIVQGED
ALSVQANSNATLLFCCMVRSMLCTRKVAEEFHLSTEAFEWLIGEIETRFQQAMASPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINLSKKPKSPSLTVFLTGGA
ARDAEKAKKVLCRLEHTTLRKMTAHTAIHYDPDPQNTIIAEDQDFVSIYYEMPDFNPARI
SPWLLRVELDRKRMTDKKLTMEQIAEKINSAFGEDLNCIFNDDNAEKLILRIRITHPEDK
LDDDDENPDQMDDSMFLRCIESSMLSEMTLQGIETIAKVYMHLPQTDAKKRTIITDSGEF
KQIAEWLLETDGTSLMRVLSERDVDHVRTYSNDICEIFMVLGIEAVRKCVEKEMNTVLSF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGPLMRCSFEETVDVLMDAAVHAEV
DPMRGVSENIMLGQLPRMGTGCFDLLLDAEKCKFGIEVPTGPGPNGDLGMGSAFFNLGSK
SPMDTPWISGATPAYDNVWSPGGGMMSGGPGFSPSAASDISSFSPGGGRSPLSSPGSPGS
PFYIPGGVSPNYSPTSPGMSPSLPNYSPGSYSPTSPSGGQSPTYSPTSPSYSPQLSPSYS
PTSPSYSLTSPTYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPSSPTYSPSSPNYSPSSPRYSPNSPTNSLGRPGSPNYSPSSPSYSPA
SPSYSSRYSPSSPSSPTYSPQPSVSSYSPTSPSYSPASPTYSPSSPTYSPDEDENKKPGG
KKGRKNK
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtatcagacttgcgaatccctctccggaccgtgaaaaaagtccaatttggc
atcctgtcgccggatgaaatccgccgcatgtccgtgacggagggtgggattcgctttacc
gagattacggaaggtggtcgccccaaactttgcggattgatggaccctcgtcaaggcgtc
atcgaccgaaactcacgctgtctaacgtgcaccggcactcagaccgagtgtcccggacat
tttggtcacattgatctcgccaaacccgtctaccacccaggatttctcgggaaaacggtc
aaagtcctgcgctgcgtgtgcttctattgttcgaagatgctcgtgtcccccactcacccg
aaaatgagggaggtcgtcgccaagaccaaaggacagcctcgacgtcgcatcgactttgtg
tatgagctttgtaagaagaagtccatttgcgacggaggtgacgaaatggatgggaatcag
ggcgaagaagatcccaatattacgtcaaagaagagcggtcacggcgggtgtggtcgtttt
cagccgaacatccgtaaagtcgggctcgagctgtttgctgagtggaagaacgtgaacgag
gcggaccaggagaagaagatggccgtcacggcggaacgtgtcctcgaaatcttgaaacac
atttctgacgaggagagccttgtgatggggatggatcccaagtggtcccgccccgactgg
atgatctattctgtccttcccgtccccccactgcccgttcgtcctgctgtcgtcacgttc
ggctcggctcgcaatcaggacgatctcacccacaaactcgcggacattgtcaaggcgaac
aacgaacttttgcgcaacgaccagtccggcgccgcagctcacattattgcagaaaatgtt
aaaatgctccaatttcatgtcgctacactcaccgataacgaaattcctggtttgccgcgc
gccatgcagacgtcgggccgtccattgaaagcgatcaaggcgcggttgaagggaaaggag
ggcagaattcggggcaacttgatgggaaaacgggtcgatttctctgcaagaacggtcatc
acaccagatccgaacttgaggattgatcaggtcggcgtgcctcgcagtatcgcgcagaac
ttgacatttcccgagatcgtgaccccgtttaatatggataagatgacggaactcgtggcg
cgagggaataaccaatatcccggagcaaagtacatcatccgctcgaacggggacagaatt
gatttgcgatttcatccgaaatcttccgatctccatttacaattaggataccgggtcgaa
cgtcacattcgagatggcgacctcgtaattttcaatcgacaacccactcttcacaaaatg
tccatgatgggtcacagggtcaaagtactgccctggtcgactttccgaatgaatttgagt
tgcacaacgccttacaatgctgattttgacggggacgagatgaatctacacgtcccacag
tcgatggaaactcgtgccgaagttgaaaatctacacatcacgacccgtcaaattatcacc
cctcaagcgaacaagcccgtcatggggatcgtgcaggacacgttgaccggcgcgaagaag
atgaccaagagggacgtcttcctgaccaaggaacaaatgatgaatttgcttatgtttttg
cccatttgggacgggaggatgccgatgcccgccatcgtgaagccgattcctctctggacc
ggaaaacaactcttcactcttatcattcccggaaatgtgaacctcgtcaaaacccacgcc
acacatccggacgacgaggacgacggtccgtacaagtggatttccccgggagacacgaaa
gtcatggtggagcatggtgaactcatcatgggaattctatgcaaaaagacgctcggaacg
agtgaggggtcacttcttcacatctgctttaccgaattaggtcacgaggttgctggccag
ttttacgggaatattcaaaccgtcgtaaacaattggttgatgtatgaagggcactcgatc
ggaattggggacacgattgcagatcctcaaacatatcttgagattcaaagaacaatcaag
aaggcgaaggaggacgtgatcgaggtgattcaaaaagcacacaacatggagctcgagcct
actccgggaaacacgcttcgacaaacgttcgaaaatcaggtcaaccgcattctcaacgat
gctcgtgacaagactggcggctctgcgaagaagtctctcacagagtacaacaacctcaaa
actatggtggtggcagggtcgaaaggatcaaacatcaacatctctcaggtcatcgcctgc
gtcgggcaacaaaacgttgaaggaaaacgaatccccttcggcttccgtaagcgcaccctt
ccccacttcatcaaagacgactacggtcctgagtcccgtggcttcgttgaaaattcctac
ctcgccggactaactccctcggaattctactttcacgccatggggggtcgtgaaggattg
gtcgacaccgcgatcaaaacggcagaaactggatacattcaacgtcgtctcatcaaagct
atggagtccgtgatggttgactacgacggcacggtacgaaactctactggacagctgatc
caactccgctacggggaagacggcctcgccgccgagaacgtcgaacaccaaacccttccc
accgtaaaactgtccaactctgcgtttgaagagcgattccgcttcgaccccacgaacgag
cgctacctccgaaaagtttttgacgaagaagtcatgcgggaaattgtcgggtcggcggaa
gttctctccgccgtggagaaggaatggaaaactttgaaggctgaccgtgccacgatgcgg
gaaatcttcccttctggagaatcgcatgtcgtcctcccttgcaatttgaaacggatgatt
tggaacgtgcaaaaaattttccacatcgacaaacgactccccgtcgatctcaacccgatc
agagtgattgaaggggtggaaaacctattgaaaaagtgtgtcatcgtgcaaggcgaggat
gctctttcggtccaggcgaacagcaatgcgaccctgcttttctgctgtatggtgagatcg
atgctgtgcacgaggaaggtcgcggaagaattccacttgtcgacggaggcgtttgaatgg
ttgattggtgagattgagacgaggtttcagcaagccatggcgtctccaggggagatggtg
ggagccttggcggcgcagagtttgggcgaaccggcgactcaaatgacgctgaatactttt
cactttgcgggagttagtagtaaaaatgtgactttgggagtgcccaggttgaaggaaatc
atcaacctctcgaagaagccgaaatctccctcactcactgttttcttgactggaggcgca
gctcgtgacgccgagaaggcgaaaaaagttctctgccgcttggaacataccacgctgcga
aagatgaccgcgcacacggccatccattacgaccctgacccacaaaacacgatcatcgca
gaggatcaagactttgttagtatctactatgaaatgccagactttaacccggcaagaatt
tcaccgtggcttctccgcgttgaactggaccggaaacgaatgactgataagaaactcacc
atggaacagatcgcagagaagatcaattccgcctttggtgaggacttgaactgcatcttt
aacgacgacaatgctgaaaagctcattctgcgcattcgaatcacacatccggaggataaa
ttagatgatgacgacgaaaaccctgatcaaatggacgactccatgttccttcgctgcatc
gaatccagcatgctctcagaaatgacactgcaggggatcgaaacaattgccaaagtttac
atgcatttgccccaaaccgacgccaagaaacggaccatcatcacagactccggtgaattc
aaacagatcgccgagtggctgctcgagacggatggaacgtccttaatgcgagtcttaagc
gagagggatgtcgaccacgtgcgaacgtattcgaacgatatctgcgaaatatttatggtc
ctgggtattgaagcagttcgaaaatgtgtggagaaagagatgaacaccgtgctttcgttt
tacgggctgtacgtcaactaccgtcacttggcgctgctctgcgacgtaatgactgccaag
ggtcacttgatggccatcacacgtcacggaatcaatcgacaagataccggaccattgatg
aggtgctcgtttgaggaaactgttgacgtcctgatggacgctgccgttcatgctgaagtt
gatccgatgaggggcgtttccgaaaacattatgttgggacaacttccccgcatgggcact
ggctgcttcgacttgcttctcgacgctgaaaagtgcaagttcggcattgaggtccccact
ggtcctggacccaatggtgaccttggaatgggcagtgcatttttcaaccttggatccaaa
tcaccaatggacacgccctggatatctggcgccactccggcgtacgacaacgtttggtct
cccggcggaggaatgatgtcaggtgggcctggattctcgccatctgctgcttctgacata
tccagcttttcacctggaggaggtcgttcgccgctcagttcacctggaagcccaggcagt
ccattctacattcctggtggagtgtcgccgaattattcgcccacatcgcctgggatgagt
ccctcgttgccgaactattctcctggatcttattctcctacaagtccgagtggaggtcag
agtccgacttattctccaacgagtccgagctattcgccacaactgagtccatcgtactcg
ccgacgagcccaagctactcactgacgagcccaacctattcgccgacgagtccgagctac
tcgccttcaagcccaagctattcgccaacgagtccatcttactcgccgacgagcccatct
tactcgccaacaagtccgagctattcaccgaccagtccgtcgtattctccgacgagtcca
tcatactcacctacgagcccgtcttattcgccgacgagcccaagttattcaccgacgagt
ccatcttattcgccgacaagcccatcttactcgccggcaagtccgagctattcgcctacc
agtccatcatactctcccacgagtccaagttattcgccaaccagcccatcgtactctccg
acaagtccatcctactctccgacgagtccatcttactcgccatcgagcccaacctattct
ccttcgtcgccgaattacagtccttcgagcccgaggtactctccaaacagtccgactaac
tcgctcggacggcccggatcgcccaattacagcccttcgagcccaagttatagtccagcg
tcgccaagttattcatcccggtattcacctagctcaccatccagtccgacctacagccca
cagccgtctgtctcgtcttactcgccaacgagtccgagttacagtcctgcgagccccacg
tattcgcccagttcgcctacctactctcccgatgaggacgagaacaagaaaccgggaggc
aagaagggcaggaaaaataaatag
DBGET
integrated database retrieval system
