Folsomia candida: 110858786
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Entry
110858786 CDS
T05043
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
fcd
Folsomia candida
Pathway
fcd03020
RNA polymerase
fcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110858786
09124 Replication and repair
03420 Nucleotide excision repair
110858786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcd03021
]
110858786
03400 DNA repair and recombination proteins [BR:
fcd03400
]
110858786
Enzymes [BR:
fcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110858786
Transcription machinery [BR:
fcd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110858786
DNA repair and recombination proteins [BR:
fcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110858786
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
110858786
NCBI-ProteinID:
XP_021963362
LinkDB
All DBs
Position
Unknown
AA seq
1890 aa
AA seq
DB search
MSQFTSDSRVPLRTVKKVQFGILSPDEIRRMSVTEGGIRFPEIMEGGRPKLGGLMDPRQG
VIDRNSRCQTCAGGQTECPGHFGHMDLSKPVFHCGFLTKTVKILRCVCFYCSKMLVSPTH
PKMREIVLKTKGQPRRRLAFVYELCKGKSICEGGDEMDGNPGEEDPNIKSKKSGHGGCGR
YQPRIRKIGIELFAEWKHVNEDDQEKKMVVTAERVLEIFKHVSDEECLVMGMDPKYARPD
WMIISVLPVPPLPVRPAVVMYGSARNQDDLTHKLSDIIKANNELLRNEQSGAAAHIIAEN
VKMLQFHVATLTDNEMPGLPRAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNLDKMTELVARGNNQYPGAKYIIRSNGDR
IDLRFHPKSSDLHLQLGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTTPYNADFDGDEMNLHVPQSMETRAEVENLHITTRQIITPQANKPVMGIVQDTLTGVR
KMTKRDVFLTKEQMMNLLMFLPIWDGKMPQPAIQKPIPLWTGKQLFTLIIPGNVNLIKTH
ATHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSEGSLLHICFTELGHEVAG
QFYGNIQTVVNNWLMYEGHSIGIGDTIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELD
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSAENVEHQSL
PTIKLSNRTFESRFKFDPTNERYLRKLFNEEVMREIIGSGDVISAVEKEWATLTSDRATM
REIFPAGDSNVVLPCNLKRMIWNVQKIFHIDKRAPVDLNPIKVIEGVENLLKKCVIVKGE
DALSMQANNNATLLFRCMVRSTLCTRKVAEEFRLSTEAFEWLIGEIETRFQQAQASPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLNGA
AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTR
ISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSED
GSKFGGAGDEEDSADKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVI
TETGEFKPIAEWLLETDGTSLMRVLSERDVDPIRTYSNDICEIFTVLGIEAVRKCVEKEM
NAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGPLMRCSFEETVDVLMDA
AAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKFGIELPTGPGPDGGLGMGGTF
FGSASTPSANSPISTPWMSGATPMYGDVWSPGTGMTPGGPGFSPSAASDISGFSPAGGRS
PVGSPGSPGSAFYIPGSPGGVSPNYSPSSPGYGLISSPGMSPSSPNYSPGGGGGSYSPTS
PIGGHSPTYSPTSPSYSPHQSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPNYSPSSPSYSPTSPTYSP
SSPNYSPSSPTYSPTSPTYSPRYSPSSPSYSPSSPNYSPQSPVLSYSPTSPSYSPASPSY
SPSSPTYSPEEDEKNKQQPQPGGKKGRKKK
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaattcacatcagactcgcgtgtccccctccggaccgtgaaaaaggtccaattt
ggtatcctttctccggatgaaatccgccgcatgtccgtgacggagggtgggattcgcttt
cctgagattatggaaggtggtcggcctaagcttggtgggttgatggatcctcgtcaaggc
gtcatcgaccgaaactcacgctgtcagacttgcgccggtggtcagaccgagtgtcctggc
cattttggtcacatggacctctcaaagcccgtcttccactgcggctttctcaccaaaacg
gtcaaaatcctgcgctgcgtgtgcttctattgttcaaagatgctcgtgtccccgactcac
ccgaaaatgagggagattgtcctcaagaccaaagggcagcctcgacgccgtctcgccttc
gtctacgaactttgcaaaggaaagagcatctgcgaggggggtgacgaaatggatggcaat
cccggcgaagaggatccaaatattaagtcaaagaagagtggtcacggtggatgtgggcgt
tatcagccgcgtatccgtaaaatcgggatcgaactctttgccgagtggaagcatgtgaac
gaggacgaccaggagaagaagatggttgtcacggcggaacgtgtgctcgaaatcttcaaa
cacgtttctgacgaggagtgccttgtgatggggatggatcccaagtacgctcgtcctgac
tggatgatcatttctgtcctccccgtccccccacttcccgttcgtcccgctgtcgtcatg
tacggttctgcccgaaaccaggacgatctcacccacaaactatccgatattattaaggcg
aacaacgaacttttgcgcaatgagcagtccggcgctgcagctcacattattgcagaaaat
gttaaaatgctccaatttcatgtcgctactctcaccgataacgaaatgcccggtctgccg
cgcgctatgcaaaagtctggtcgtcccctgaaagcgatcaaggcgcggttgaagggaaag
gagggcagaattcgaggaaacttgatgggaaaacgagtcgatttttctgcaagaacggtc
atcacaccagatcccaacttgcggattgatcaggtcggcgttcctcgcagtattgcacag
aacttgacctttcccgagatcgtgaccccgtttaatctagataagatgacggaactcgtg
gcgcgaggaaataaccaatatcctggcgcaaagtatatcatccggtcgaacggggacaga
attgatttgcgatttcatccgaaatcttccgatctccatttacaattgggataccgggtc
gaacgtcacattcgagatggtgacctcgtaattttcaaccggcaacccactcttcacaaa
atgtctatgatgggtcacagggtcaaagtactaccctggtcgactttccgaatgaatttg
agttgcacaacgccttacaatgctgattttgacggcgatgagatgaatctacacgtccca
cagtcaatggaaactcgtgccgaagttgaaaatctgcacattaccacgcgtcaaattatc
acccctcaagcgaacaaacccgtcatggggatcgtgcaggacacattgaccggggtgagg
aagatgaccaagagggacgtcttcctgaccaaggaacaaatgatgaatttgctcatgttc
ttgccaatttgggacggaaagatgcctcagcctgccatccagaagccgattcctctctgg
actgggaagcaacttttcacgcttatcattcccggaaacgtgaacctcatcaaaacccac
gccacacatccggacgacgaggacgacggtccgtacaagtggatttctccgggagatacc
aaagtcatggtcgagcatggcgaactcatcatgggaatcctatgcaaaaagacgctcgga
acaagtgaagggtcacttcttcacatctgctttaccgaattaggtcacgaagttgctggt
caattttacggcaatattcaaactgtcgtaaacaattggttgatgtatgaaggacactcg
atcggtattggggacacgattgcagatcctcaaacatatctcgagattcaaaagacgatc
aagaaggcgaaggaggacgtgattgaggttattcaaaaagcgcacaacatggagctcgac
cccactcctggtaacaccctccgacaaacgttcgaaaatcaagtcaacaggatcctcaac
gacgctcgtgacaagactggtggttccgcaaaaaagtctctcacagagtacaacaacctc
aaagctatggtggtggcagggtcgaaaggatcaaacatcaacatttcccaggttattgcc
tgcgtcggacaacaaaacgttgaaggaaaacgaatccccttcggcttccgtaaacgcacc
ctacctcactttatcaaagacgattacggtcctgagtcccgtggcttcgttgaaaattcc
taccttgccggactgactccctcggaattctactttcacgccatgggtggtcgagaaggt
ttgattgatactgctgtcaagaccgcagaaactggatatattcaacgtcgtctcatcaaa
gctatggagtccgtcatggttcactacgacggcacggtgcgaaattctgtcggacaactg
atccaactccgctacggagaggacggcctctccgccgagaacgtagaacatcaaagtctc
cctaccattaaactctccaaccgcacgttcgagtctagattcaaattcgaccccacgaac
gagcgctacctccgcaaactctttaacgaagaagtcatgcgagaaatcattgggtcagga
gatgtcatctcagccgtggagaaggaatgggcgactttgacctctgaccgcgcaacgatg
agggaaatctttcctgccggcgactcgaacgtcgtcctcccatgcaacctcaaaagaatg
atttggaacgtacaaaagattttccacattgacaagcgagcccccgtcgatctcaacccg
atcaaagtgattgaaggtgtggaaaacctgttgaaaaagtgcgtcatcgtgaaaggagag
gatgctctctcgatgcaggccaacaacaacgccacgcttctattccgctgcatggtgaga
tctacgctgtgcacacgcaaagttgccgaagaatttcgcctgtcgaccgaggcgtttgaa
tggttgattggtgagatagagacgaggttccagcaggcgcaggcatctcccggggagatg
gtgggagccttggcggcacagagtttaggtgaaccggcgactcaaatgacgctcaacact
ttccattttgctggagtcagtagtaaaaatgtcaccttgggtgtgcccagattaaaggaa
atcatcaacatttccaagaagccgaaagccccttcactcaccgttttcttgaacggagct
gcagctcgtgacgccgagaaggccaaaaacgttctctgccgcttggagcacacaacgctg
cggaaggtgactgcgaacacggccatctattacgaccccgacccacaaaacactgtcatc
ggggaggatcaagagtttgttaatgtctactatgaaatgcctgactttgacccgaccaga
atctcgccttggcttctccgcatagaactcgaccgcaagagaatgactgataagaaactg
accatggaacagattgcagaaaagatcaatgcgggtttcggtgacgatttgaactgtatc
tttaacgacgacaatgctgagaaacttgtgctacgtattcgtatcatgaactcggaggac
gggtctaaatttggtggtgcgggtgacgaggaggattccgccgataagatggaggatgac
atgttccttcgctgcatcgaggctaatatgttgtcagacatgacgctgcaggggatcgaa
gcgattggaaaagtttacatgcatttgcctcagaccgattccaagaagaggatcgtaatc
acagagactggcgaatttaaaccgatcgcagagtggctgcttgaaacggatggaacgtcc
ctgatgcgagtcttgagtgaaagggacgtcgaccccatcagaacatattctaacgatatt
tgtgaaatattcacggttcttggtatcgaagcggttcgaaaatgtgtggagaaggagatg
aacgccgttctctccttttacggcctgtacgtcaattatcgtcacttggcgctcctctgc
gacgttatgactgcaaagggtcacttgatggccatcacacgtcacggaatcaatcgacaa
gataccggaccattgatgaggtgctcgtttgaggaaactgttgacgtcttgatggacgcg
gccgcccacgctgaggttgacccgatgcgaggcgtttctgaaaacattattatgggacaa
cttccccggatgggtactggctgcttcgacttgctcctcgacgctgaaaagtgcaagttc
ggtattgagctccccactggtcctggacccgacggcggacttggaatgggtggtacgttt
ttcggctctgcgtccactccgagcgccaactcaccaatttccacgccctggatgtctggc
gccactccgatgtatggcgacgtttggtctccaggcacaggaatgacgcctggtggacct
gggttctcaccatccgctgcctctgacatatccggcttttcacctgctggaggtcgttcg
cctgtcgggtcacctggaagcccaggcagtgcattctacattcccggcagtcctggtggc
gtgtcgccgaattattctccctcatcgccaggttatggattgatctcgtcgcctgggatg
agtccctcgtcgccaaattactctcctggcggtggaggtggatcgtactctcctacaagt
ccgattggaggtcatagtccgacttattctccaacgagtccgagctattcgccccaccag
agtccatcttactcgccgacgagtccaagttactcaccgacgagcccatcctattcgccc
acgagcccgagttactcacccacaagtccaagctattcgccaacgagtccatcgtactcg
ccgacgagcccgtcttactcaccgaccagtccgagctattcaccgaccagtccatcgtat
tctcccacgagtccatcatactcgcctacgagcccatcctattcaccaacgagcccaagt
tattctccgacgagtccatcttactcgccgacaagtccgagctattcaccctccagtcca
tcatactctcccacgagtccaagttattcgccaactagtccatcgtactctcccacgagt
ccatcctactctccgacaagtccatcttattcgccatcaagccccagctattctccttcg
tctcccaattacagtccttcaagtccgagctattctccaactagcccgacttactccccc
agttcacccaattacagcccttcgagccctacttacagtccaacttcgccaacttattca
ccccggtattctccaagctcaccttcgtactcaccatccagtccgaactacagcccacag
tctcctgtcttgtcttactcgccaaccagtccgagttacagtcctgcgagcccctcatat
tcgcccagttcgcccacctactctcccgaagaggacgaaaagaacaaacagcagccccaa
ccgggaggcaagaagggcaggaaaaagaaatag
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integrated database retrieval system
