Folsomia candida: 110862618
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Entry
110862618 CDS
T05043
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fcd
Folsomia candida
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fcd03016
]
110862618
Enzymes [BR:
fcd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110862618
Transfer RNA biogenesis [BR:
fcd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110862618
Prokaryotic type
tRNA splicing ligases
110862618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
110862618
NCBI-ProteinID:
XP_021967531
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVIRSYEDEQKYLERISENSWRIKKGFQPNMNVEGIFYVNKPLEKLMFEELRNSCRPGAV
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDYDDPNSIVSPGGVGFD
INCGVRLLRTNLFAKDVIPVKEQIAQSLFDHIPVGVGSKGIIPMTAKDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLQADPSKVSSRAKKRGLPQLGTLGAGNHYAEIQVVSEIYD
VWAARKMGIEEKGQVCVMIHSGSRGFGHQVATDALLSMEKAMKRDNIETNDRQLACARIR
SQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFSKQFNMSADDLDMHVIYDVSHNIAKIE
QHVVDGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNIDFKDVLAKLQNQGISIRVASPKLVMEESPESYKNVT
DVVDTCHAAGISKKCIQLKPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtgattcgatcgtatgaagatgaacaaaaatatttggagagaatctctgagaattca
tggagaatcaaaaaaggtttccagccaaacatgaatgtggaaggaattttctatgtgaat
aaaccgcttgaaaagctaatgtttgaggaacttcgaaattcttgtcgaccaggcgccgtg
gggggatttcttccaggaatgaagcagattgcgaatgtcgcagccctacctgggatcgtg
gggaagtcggtcgggcttccagacgtccactctggatatggatttgccattgggaacatg
gcagccttcgactatgacgatcccaattccattgtttctccaggcggtgtgggatttgat
atcaattgtggggttcggttactcaggaccaacttgtttgccaaagatgttattcctgtc
aaggaacaaatagctcaatccctgtttgaccatattccggttggggtcggatcaaaggga
attattccaatgacggcaaaggacatggaagaagcgttggaaatgggaatggactggtct
cttagagaaggatacgtctgggcagaggacaaagaacattgcgaggaatatgggagaatg
cttcaagctgatcctagcaaagtgtcgagtcgtgcaaagaaaaggggacttccccagtta
ggaaccttgggggcaggcaatcactacgctgaaattcaagtagtttcagaaatctacgat
gtctgggctgcaagaaagatggggattgaggaaaagggacaagtttgtgtgatgattcac
tcgggatctagaggatttgggcatcaagtggcaactgatgcattgttatcaatggagaaa
gcaatgaaacgtgataacattgaaacgaatgacaggcaacttgcttgtgctagaattagg
tcgcaggaaggccaggactatctaaaggcaatggcagctgctgcaaattttgcttgggtt
aaccgttcttccatgacgtttcttaccagacaagccttttctaaacagtttaacatgtct
gctgatgacttggatatgcacgttatttatgatgtatcgcacaatattgcaaaaatcgag
cagcatgttgtggatgggaaattaaagacacttttggtgcatcgaaagggttccacccga
gccttccctccacatcatccactaattccagtagattaccaacttaccggtcagcccgtt
ttaattggtggaacaatgggtacttgctcctacgtgttaactggaactgagcaaggaatg
caagaaacattcgggagtacttgccacggagcaggtcgagctttatcgcgagcaaaatca
aggcggaacattgattttaaagatgtgctcgccaaactgcaaaaccaaggtatcagcata
cgcgtggcgtctccgaaattagtgatggaagaaagtccagaaagttataagaatgtgact
gatgtcgttgacacgtgtcacgctgctggaatctccaaaaaatgtattcagttaaaacct
attgctgttataaagggctga
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