Folsomia candida: 110863176
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Entry
110863176 CDS
T05043
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fcd
Folsomia candida
Pathway
fcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110863176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcd03019
]
110863176
Enzymes [BR:
fcd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110863176
Messenger RNA biogenesis [BR:
fcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110863176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110863176
NCBI-ProteinID:
XP_021968116
LinkDB
All DBs
Position
Unknown
AA seq
493 aa
AA seq
DB search
MTEITRSNYQELLPEINEQIKNATFISFDAEFSGLGPPSGGIRTSLFDSGAERYQKLRSI
VMQNTAPQIGFCIFRKTDDDAANVYHVDGYQAYVSEPCFASFNNTNNVVLSLEYKCAKFL
RQCNFEFNALIERAVPYLNSKKTRDLTVYFNQHPDFIWKHPNRYFDKTFFPESERAGKHC
YTSEDKVNIVKRLRGLSQIVDVIREHKIPLVGHNFALDLLYFFRMFCTELPDDYDTFKSL
VGNFLPHVYDTKFMVLSCRKLLHSHPAYKNNQDKDKLESSSLFTAFLNTTVIGDRFCPHV
EMNSTCVHFEKSLQIGRESDLEVDKNDLVHSPGFDSCITGILFLNISHIAARIDKNFERR
TGPPTLSELLENVQSWKDQVFISRAAVLAMYLSGNDPKPCRPRWTEATIMQKINFPVLKE
SLLKLGPVDIEKINDYSFRFAAAGGKCARQMKKLLTDEGYKIKNINIPYNKESYAVSGEL
KQDGVYDRSKLLG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgacggagataacgcgttccaattaccaagaattgctccctgaaattaatgaacaaatt
aaaaatgcaaccttcataagctttgatgctgaattttctggactcggccctccctctggg
ggaattcgcacatcactatttgatagcggtgcagaacggtaccaaaaattacgtagcatc
gtaatgcaaaacacagctcctcagattggcttctgtattttccgtaaaactgacgatgat
gctgctaacgtatatcatgtcgatggataccaagcatacgtttctgaaccatgtttcgca
agttttaacaacacgaataatgtcgttttatccctggaatataaatgtgccaaatttttg
agacagtgcaattttgagttcaatgcgcttatcgaaagagccgtaccttatctaaattcc
aagaaaactagggatcttacagtgtattttaaccagcatcctgactttatatggaagcac
cctaaccgttattttgataaaacatttttcccagagtctgaaagagctggaaaacattgt
tacacatcagaggataaagtaaacattgtaaaacggctgaggggattgtcgcaaatagtt
gatgttatccgggagcacaaaatccctttggttgggcacaattttgcattggacctgcta
tatttcttcagaatgttctgcacagagttaccagatgactatgatacattcaagagtttg
gttggcaacttcctccctcacgtgtatgatacaaagttcatggttctaagctgtaggaaa
ctcttacatagtcacccagcgtataagaataatcaagacaaggacaaattagaatcaagc
agtttatttacagcatttctaaatacgaccgtgataggtgatcggttttgtccacatgtg
gagatgaactctacatgtgtccactttgaaaaaagtttgcaaatcgggcgagagtctgat
ttagaggttgacaagaacgacctggtacatagtcctggatttgattcatgtatcactggg
attttgtttcttaacattagccatattgcagctagaattgataaaaattttgagcgaagg
accggtccccctactctttccgaactcttggaaaacgtccagtcatggaaagatcaagtt
tttatttcccgtgcagccgtgctggcaatgtatcttagtggaaatgatccaaaaccttgt
agaccaagatggactgaagccacgattatgcagaaaattaactttcccgttctaaaggag
tccttactgaaattaggtccagtagacattgagaaaataaacgattactcattccgattt
gctgctgcaggtggtaaatgtgcaagacaaatgaagaaactgcttacggatgaaggatac
aaaattaaaaacatcaatattccttacaacaaagaaagctatgcggtatctggagaattg
aaacaggatggagtgtatgaccgatccaagctgttgggataa
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