Flagellatimonas centrodinii: JN531_001575
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Entry
JN531_001575 CDS
T07957
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
fce
Flagellatimonas centrodinii
Pathway
fce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JN531_001575 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fce03400
]
JN531_001575 (sbcB)
Enzymes [BR:
fce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JN531_001575 (sbcB)
DNA repair and recombination proteins [BR:
fce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JN531_001575 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JN531_001575 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JN531_001575 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
GAGA
Motif
Other DBs
NCBI-ProteinID:
ULQ46987
LinkDB
All DBs
Position
310753..312213
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AA seq
486 aa
AA seq
DB search
MTLKRFLWHDYETFGADPARDRPAQFAGLYTDADLQPVGEPMMFYCRPVMDVLPHPDAVA
ITGITPQIAEREGLDEPVFAQRIFDAFSRPGTCGVGYNSIRFDDEVTRHLFYRNFHDPYI
REWSGGNSRWDLIDVVRLWHALRPDGLEWPTGEHGATSFKLEHLTAANGLAHEQAHDALS
DVRATLVLAQKLKQAQPRLFEHALGLRDKRAAATLLAGSTQAPVLHVSSRIPAALGCLTA
VVALAPHPTNRNCVLSFDLRQDPTDLLMLDVDELQDRLFTPREDLPEGIERLALKGIHLN
KSPMLAPLATLRPAQAERWQLDLAEIAEHHAVLMQAGPALVEKVQAIYAQDDRATDDPEV
SLYGGFIPDSDRARCERVREAGPAGAAAFDGRFDDPRLNELLFRWRARHAPDQLEEGERA
AWQEFLQRKLTIDTGLATLTLPAYRALVDARIRQETDPVRLRQWLELQQWPRDSGLLDWI
RDQSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcaagcgctttctctggcacgactacgaaacctttggcgccgacccggcacgg
gatcgtccggcccagttcgccgggctctataccgacgccgatctgcaaccggtcggcgag
ccgatgatgttctactgccgcccggtcatggatgtgctgccgcatccggatgcggtggcg
atcaccggcatcacaccgcagatcgcagagcgcgagggactggatgagccggtcttcgcg
cagcgcatcttcgacgcgttcagccggcctggcacctgtggcgtcggctacaactcgatt
cggttcgacgacgaggtgacccgtcatcttttctaccgaaacttccacgatccctacatt
cgcgagtggtccggcggcaacagccgctgggacctgatcgacgtggtgcgcctgtggcac
gcccttcggcccgacgggttggaatggccgaccggcgagcacggcgccaccagcttcaag
ttggagcacctgacggcggccaacgggctggcacatgaacaggctcacgacgcactgtcc
gatgtgcgcgccaccctggtgctggcgcagaagctcaaacaggcccagccgcgactgttc
gagcacgcactcggtctgcgcgacaaacgggccgctgccaccctgttggcgggcagcacc
caggccccggttctgcatgtgtcgtcccgcattcccgcggcgctcgggtgcctgacggcg
gtggtggccctggccccgcatccgaccaatcgcaactgcgtgttgagcttcgacctgcgg
caggacccgaccgatctgctgatgctcgatgtcgacgagcttcaggaccggctattcaca
ccgcgcgaggacctgccggaaggcatcgagcggctggcgctgaagggcatccacctgaac
aagtcgccgatgttggcgccactggccacgctgcggccggcacaggccgaacgctggcag
ctcgatctcgccgaaatcgccgagcatcatgccgtgttgatgcaggcgggtccggcgctg
gtggaaaaggtgcaggccatctatgcgcaggacgaccgcgctaccgatgaccccgaggtc
tcgctctacggcggcttcattccggatagcgaccgggcgcgatgcgagcgcgtccgcgag
gctggtcccgccggtgcggcagccttcgatggccgcttcgacgacccgcgactgaacgaa
ctgctgttccgctggcgcgcgcggcatgcgccggaccaactggaggagggcgagcgcgcc
gcctggcaggaattcctgcagcgcaagctgacgatcgacaccggcctcgccacgctgacc
ctgccggcctaccgcgcgctggtggacgctcgcatccgccaggagaccgatccggtccgc
ctgcggcagtggctggagctgcagcaatggccccgcgacagtggcctgctcgactggatc
agggaccaaagcgctgcgtaa
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