Flagellatimonas centrodinii: JN531_002080
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Entry
JN531_002080 CDS
T07957
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
fce
Flagellatimonas centrodinii
Brite
KEGG Orthology (KO) [BR:
fce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fce03016
]
JN531_002080 (rnd)
Enzymes [BR:
fce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JN531_002080 (rnd)
Transfer RNA biogenesis [BR:
fce03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JN531_002080 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DUF3747
Motif
Other DBs
NCBI-ProteinID:
ULQ47084
LinkDB
All DBs
Position
423113..424210
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AA seq
365 aa
AA seq
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MTPLWIDTATQLQAACARWSARPWITVDTEFVRIDTYRARLCLVQVGDGHENACIDTLAI
DDLQPLWALLHNPAVLKVLHACSQDFEIVVEHTGATPAPVFDTQIAATLLGFGDQIGYAG
LVERCLGVVIDKRLSRTDWARRPLTGPEIAYAADDVRHLATLYPTLQQQVADAGRLDWLA
EDCQRLTDANRYSVRPDDAWQRLKGLGRLDAASQSRAVALAAWRETQAQARNRPRKWIIE
DAAIYQLAERAPDSAAALAQLSSLPPKTLERHGSALLAVLQEAPAARQWMRDELAGDDKA
LFKRLQALVREAGERLQLPPGYLAPRQDLEALVRTGPAARAGVLQGWRRPAVGEALLAAL
PPTSD
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaccccactctggatcgacacggcgacgcaactgcaggcggcctgtgcacgatggtcg
gcgcgcccctggatcaccgtcgataccgagttcgtgcgcatcgacacctaccgcgcgcga
ctgtgtctggtgcaggtaggcgatggccacgagaatgcctgtatcgacacgctggcgatc
gatgacctacaaccgctgtgggcgctgctgcataaccccgcagtgctcaaggtgctgcat
gcctgcagccaggactttgaaatcgtggtggaacacaccggcgccaccccggcaccggtg
ttcgatacccagattgccgcgacgctgctgggcttcggtgaccagatcggttacgccggt
ctggtggagcgctgcctgggcgtggtgatcgacaagcgtctgtcgcgcactgactgggcg
cgacgccccctgaccggcccggagattgcttatgcggccgacgatgttcgccatctggcg
acgctctacccgaccctgcaacagcaggtcgccgacgctggccgtctcgactggctggcg
gaagactgtcagcggctcaccgacgccaaccgctacagtgtcaggccggacgacgcctgg
cagcgcttgaagggcctcggccgactggatgccgccagccaaagccgggcggtggcgctc
gctgcctggcgcgaaacccaggcacaggcccgcaaccggccgcggaagtggatcatcgag
gatgccgccatctatcaactggcggagcgcgcgccggactccgcggctgcgctggcacag
ctgtcgagcctgccgccgaagaccctggagcgccacggtagtgccctgctggcggtgctg
caggaggcgccggccgcccggcagtggatgcgcgacgaactcgcaggtgacgacaaagcg
ctgttcaagcgcctgcaggcgctggtgcgcgaggctggcgaacgcctgcagttaccaccg
ggctacctggcaccacggcaggacctcgaggctctggtccgcaccgggcctgcggcccgc
gcaggcgtgttgcaaggctggcggcggccggccgtgggcgaagcgctgctggcggcactg
ccgcccacgtcggattga
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