Flagellatimonas centrodinii: JN531_003225
Help
Entry
JN531_003225 CDS
T07957
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
fce
Flagellatimonas centrodinii
Pathway
fce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JN531_003225 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fce03400
]
JN531_003225 (uvrA)
DNA repair and recombination proteins [BR:
fce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JN531_003225 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JN531_003225 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_23
nSTAND1
RsgA_GTPase
NACHT
AAA_22
AAA_21
DnaJ_CXXCXGXG
AAA_25
cobW
nSTAND3
Viral_helicase1
AAA_30
DUF2255
ScfRs
BTRD1
UPF0547
Motif
Other DBs
NCBI-ProteinID:
ULQ47304
LinkDB
All DBs
Position
685733..688561
Genome browser
AA seq
942 aa
AA seq
DB search
MDSIRIRGARTHNLQNISLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSY
ARQFLSMMQKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTVTEIYDYLRLLFARVGTARC
PDHGVTLAAQSVAQMVDTVMALPESSAWMLLAPVVRGRKGEHAEWFEQARAQGFVRVRVD
GTVYELDEVPVLDRKKKHDIEVVVDRFKVRDDLKQRLSESFETALRLSDGLATIAPHGDS
DAEPIGFSARMSCPHCGYALEALEPRLFSFNAPHGACSTCDGLGQLQVFDSERVVAHPEL
SLAQGAIRSWDKRNPYYWHFIQSLATHYGFDPDKRFDRLADKHRQVILYGSGDEKIAFEY
PDEGGRKRVSTHKFEGIIPNLERRYRETDSDAVREELARFLSQKACPDCGGDRLNRAARN
VFVADRTLPALTQLSVRDAEAFFGTLTLPGHRGEIAEKILKEISARLGFLNNVGLDYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLFRLRDLGNT
VIVVEHDEDAIRHADHVVDIGPGAGVHGGRIVAQGTPDVVAATEGSVTGAYLSGREAIPV
PKQRGKWHADKQIGIRNARGNNLKNVDADIPIGLITCVTGVSGSGKSTLINDTLQAWAAR
HLNGAASHHSPCDDIIGLEHLDKVIDIDQSPIGRTPRSNPATYTGLFSPIRDLFAGVPES
RARGYTPGRFSFNVKGGRCETCQGDGVIKVEMHFLPDVYVTCDTCHGRRYNRETLEIRYK
GKTVDEVLDMTVETACEFFKPVPALHRKLSTLMDVGLSYITLGQNATTLSGGEAQRIKLA
KELSRRDTGATLYILDEPTTGLHFHDVAQLIKVLERLRDHGNTVVIIEHNLDVIKRADWV
LDLGPEGGSGGGELVASGTPEQVTTVKRSYTGRFLKPLLKKR
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggactcgatccgcattcgcggcgcgcgcacgcacaacctgcagaacatctcgctggat
ctgccgcgcgacaaactgatcgtcatcaccggcctgtcaggctccggcaagtcgagcctg
gcgttcgacaccctgtatgccgagggccagcgccgctatgtcgagtcgctgtcgtcctat
gcacgacagttcctcagcatgatgcagaaaccggacgtcgacaccatcgaaggcctgtca
ccggccatttcgatcgagcagaaatcgaccagccacaatccgcgctccacggtcggcacg
gtcaccgaaatctacgattacctgcggttgctgttcgcccgcgtcggcaccgcgcgttgc
cctgatcacggggtgacgctggcggcgcagtcggtggcacagatggtcgataccgtgatg
gcactgcccgagagctcggcctggatgctactggcgccggtggtgcggggccgcaagggg
gaacatgccgaatggttcgagcaggcgcgggcccagggcttcgtgcgggtgcgggtcgac
ggcaccgtctacgagcttgacgaagtgccggtgctggatcgcaagaagaagcacgacatc
gaggtggtggtggaccgcttcaaggtgcgcgacgacctcaagcaacgcctgagcgaaagt
ttcgagaccgcgttgcggctgtccgacgggctggccaccatcgcaccccatggcgacagc
gatgccgagccgatcggcttctcggccagaatgagctgcccgcattgcggctatgcgctg
gaggcgctggagccgcgtctgttctccttcaacgccccgcatggcgcgtgcagcacctgc
gacgggctcggccagttgcaggtgttcgattccgagcgggtggtggcccacccggaactg
tcgctcgcacagggcgccatccgcagctgggacaagcgcaatccatactactggcacttc
attcagtcactggcgacccactatgggttcgacccggacaagcgcttcgaccgcctcgcc
gacaagcaccggcaagtgatcctgtacggcagcggcgatgaaaagatcgctttcgagtac
cccgatgaaggcgggcgcaaacgggtctccacccacaagttcgagggcatcattcccaac
ctcgaacggcgctatcgcgaaaccgactccgatgcggtgcgcgaggagctggcgcgtttc
ctttcgcagaaggcctgccccgactgcggcggcgaccgtctcaaccgcgccgcccgcaac
gtgttcgtggcggaccgcacgctgccggcactgacccagctgtcggtccgtgatgccgaa
gcctttttcggcacgctgaccctgccgggccaccggggcgagattgccgagaagattctc
aaggagatcagcgcccgcctcggctttctcaacaatgtcggactcgactacctgacgctg
tcacgcagcgccgaaacactgtcgggcggcgaggcccagcgcatccgcctggcaagccag
atcggcgccggtctggtcggcgtcatgtatgtgctcgacgaacccagcatcggcttgcac
caacgggacaacgagcgcctgttgaaaaccctgttccgcctgcgcgacctcggcaacacc
gtgatcgtggtggagcatgacgaggatgccatccgccacgccgatcatgtggtcgatatc
ggccccggcgccggtgtccatggcggacgcatcgtcgcccagggcacgcccgatgtcgtg
gccgcaaccgagggctcggtcaccggcgcctacctgtcgggccgcgaggcgataccggtg
cccaagcagcgaggcaaatggcacgccgacaaacagatcggcatccgcaacgcgcgcggc
aacaatctcaagaatgtcgacgccgatattccgatcggcctgatcacctgcgtcaccggg
gtatcgggctcaggcaaatcgaccctgatcaacgacaccctgcaggcctgggctgcccgc
cacctcaacggtgcggcctcccatcattcgccctgcgacgacatcatcgggctcgaacac
ctggacaaggtgatcgacatcgaccaatcgccgatcggccgcaccccgcgctccaacccg
gccacctacaccgggttgttttcgccgatccgcgacctcttcgccggcgtccccgaatcg
cgggcccgcggctacacgccgggacgcttcagtttcaacgtcaagggcggccgctgcgaa
acctgccagggtgacggcgtgatcaaggtggagatgcacttcctgccggatgtctacgtc
acctgcgacacctgccacggacgccgctacaaccgcgagacactggagatccgctacaag
ggcaagactgtcgacgaagtgctcgacatgacggtggaaaccgcctgcgagttcttcaag
cccgtgccggcgctgcaccgcaagctgagcaccctgatggatgtcgggctgtcgtacatc
acgctggggcagaacgccaccacgctttccggcggcgaagcgcagcgcatcaagctggcc
aaggagctgtcccgccgcgacaccggcgccaccctctacatcctcgacgaacccaccacc
ggtctgcacttccacgacgtggcgcagttgatcaaggtattggaacgcctgcgcgaccat
ggcaacacggtggtgatcatcgagcacaatctcgacgtcatcaaacgcgccgactgggtg
ctggatctcggcccggagggcggcagcgggggtggcgagctggtggccagcggcacaccg
gagcaagtgacgacggtgaaacgctcgtataccgggcgcttcctcaagcccctgctgaag
aagcgctga
DBGET
integrated database retrieval system
