Flagellatimonas centrodinii: JN531_008835
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Entry
JN531_008835 CDS
T07957
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
fce
Flagellatimonas centrodinii
Pathway
fce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JN531_008835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fce03019
]
JN531_008835
Enzymes [BR:
fce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JN531_008835
Messenger RNA biogenesis [BR:
fce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JN531_008835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ULQ45232
LinkDB
All DBs
Position
complement(1878124..1879398)
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AA seq
424 aa
AA seq
DB search
MTQPDHLSELRFDQLSLHPTLQTGLDRLGFTHCTPIQAACLPRALRGEDLAGQAQTGTGK
SAAFLLATMNHLLQTPRKEGADSGSPRAIMLAPTRELAIQILKDAEGIGADSGLRLAVCY
GGAGYETQREQLEAGVDILIGTPGRLIDFLKQGTYHLKDIEVLVLDEADRMFDLGFIDDI
RYLLRRMPKAGLRRNYLFSATLSHRVLELAYEHMNSPQKIEIEPEQVTADRVRQTLIHVA
NDEKLPLLVGWLRQHEPFRTIVFVNTKRVAEEVERGLNANGLQSAVLSGDVAQTRRMTLL
ENFKQGELPILVATDVAARGLHIPSVSHVINYDLPQDAADYVHRIGRTARAGEAGDAVSL
CCETWVYGLPAIEAYIGSRLPVQALDEAWLPADFIRPPRPPRPPRRPGSSSGPRRGGGGG
GRRR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgacccaacccgaccatctgtccgagctgcgcttcgaccagctctcccttcaccccacc
ctgcaaacaggcctcgaccgcctcggattcacccactgcacgccgattcaggccgcctgc
ctgccgcgcgcgctgcgcggtgaggacctcgccggccaggcccagaccggcacggggaaa
tcggccgccttcctgctggcgacgatgaaccacctgctgcagacaccgcgcaaggaaggc
gccgacagcggcagcccgcgcgcaatcatgctggcccccacgcgcgaactggcgatccag
atcctcaaggatgccgaaggcattggcgcggacagcggcctgcggctggcggtctgttac
ggcggcgccggttacgaaacccagcgcgaacagctggaagcgggtgtcgacatcctgatc
ggcacccccgggcggctcatcgatttcctcaaacagggcacctatcacctcaaggacatc
gaggtgctggtacttgacgaggccgaccgcatgttcgacctcggctttatcgacgacatc
cgctatctgttgcggcgcatgccgaaagccgggctacgccgcaactatctgttctcggcc
accctgtcgcatcgcgtgctggaactggcttacgagcacatgaacagcccgcagaagatc
gagatcgagccggagcaggtcacggccgaccgggtccgtcagaccctgatccatgtcgcc
aacgacgaaaagctgccgctgctggtgggctggctgcgccagcacgagcccttccgcacc
atcgtgttcgtcaacaccaaacgggtggccgaagaagtggaacgcggcctcaatgccaat
gggctgcagtctgccgtgctgtccggtgacgtggcccagacccgccgtatgaccctgctg
gagaacttcaaacaaggggagctgccgattctggtggccaccgatgttgccgcccgcggc
ctgcacatcccgtcggtctcgcacgtcatcaactatgacctgccgcaggatgcagccgac
tatgtgcaccgcatcggtcgcaccgcgcgggccggtgaggcgggcgatgccgtttcactg
tgctgcgagacctgggtctacggcctgcccgccattgaggcctacatcggcagccggcta
ccggtacaggcgctcgacgaagcctggctgccggctgacttcattcgcccgccgcggcca
ccgcggccgccccgccgccccggcagcagcagcggcccgcgccgcggtggtggcggaggt
ggtcgccggcgctag
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