Francisella cf. novicida Fx1: FNFX1_0126
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Entry
FNFX1_0126 CDS
T01937
Name
(GenBank) ribonuclease II family protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
fcf
Francisella cf. novicida Fx1
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fcf03016
]
FNFX1_0126
Enzymes [BR:
fcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FNFX1_0126
Transfer RNA biogenesis [BR:
fcf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FNFX1_0126
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AEB27074
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Position
124986..126842
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AA seq
618 aa
AA seq
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MQKNSLVIFKSKPAKVINLLDKKIEIETLDGKNIKLPAKSVQLLVESEKDFELESLKELE
IAELEMTWELLQEQQQTSVEELCELLFESIGVNQAYTVWLLVSEGEYFSFNDDFSINIHS
QEQKNAIVRDKQEKLKKEQELNDFIERLNNKTFNEDDRKFLKEIEALATLKTNKCRFFKY
LNMEESENSAYKSLLDIGYWDEFFNPYLYRYGAELEHNSAEFNYNSKSDNQRVDLTHLKA
YAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEVDLQARARGSNLYVPEQIVM
MLPPQATAKLGLGLQEVSPAVSVGFTIDEQGDIHDIEICFSNIKVTRYSYEFVEENMHTL
ELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANKNVKLTDLPRLNSRTLVRDTMLMA
GVAVGQFCIKNNISVPFSTQPEHDLGQDGLENIDSIADMFATRKKLQRGRYSTQPSIHAG
MGLEAYVQVTSPLRRYLDLIVHYQLRNFFQHKEMISAQEIDNIIAQVDIPIKSNRQTERF
SNSHWKLVYLIQNPDLEFQATVIEKLEKGRLMVSIAALAMTKKLSVSGKYDLNDQINLQN
TSVNLVTQEAFFRVIEEN
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaattctctagtaatatttaaatctaaaccagcaaaggttattaatctctta
gataaaaaaattgagattgagactctcgatggtaaaaatattaagttacccgcaaagagt
gttcaattacttgtagagtcagaaaaggattttgaacttgaaagtttaaaagagctagaa
atagctgaacttgaaatgacttgggaattattacaagagcaacaacaaacatctgttgaa
gagctatgtgagttactttttgaatctataggggtaaatcaggcttatactgtgtggctt
ttagtttcagaaggagagtattttagctttaatgatgattttagtatcaatattcattca
caagagcaaaaaaatgcaatagttagagacaaacaagagaaacttaaaaaagagcaagaa
cttaatgatttcatagagcgtttaaacaataagacttttaatgaagatgataggaaattt
cttaaggaaatagaagctctagcaacacttaaaactaataagtgtcgtttttttaagtac
ttaaacatggaggagtctgagaatagtgcgtataaatcgcttttggatattggctattgg
gatgagttttttaacccttatttatataggtatggtgctgagttagaacataattctgca
gagtttaactacaattctaaatcagataaccagcgagtagatctgacacatttaaaggct
tatgctatagatgatgaaggtagtaatgatcctgatgatgcaattagttgggatagccaa
aaaaataaaatgtgggtacatatcgcagatccttcttctagtattagttttggtgatgag
gttgatcttcaagctagagcacgaggctcaaatttatatgtgccggaacagatagtcatg
atgttacctcctcaagcaacagcaaaattaggcttaggcttacaggaggtatctcctgca
gtatctgtaggatttacgattgatgagcaaggtgatatccacgatattgaaatatgcttt
agtaatataaaagttacacgatattcttatgaatttgttgaagaaaatatgcatacttta
gagcttggcgatatagtaagttatgcaaaatatttcactgataagcgtttatctaaaggt
gcagttgagcttgatttcccagagataaagatatcattagatgctaataaaaatgttaaa
ttaactgatttaccacgtttaaactcaaggacacttgtgcgagatacaatgctaatggct
ggtgttgcagtaggacagttttgtattaaaaataatattagtgtacccttttctacacag
cctgaacatgatcttgggcaagatggtttagagaatatcgattcaatagctgatatgttt
gcaacacgcaaaaaactccaaagaggcagatactctacacaacctagtattcatgcaggg
atgggattagaagcctatgtacaagtaactagtccattgagaaggtatcttgatttgatt
gtacactatcagttacgtaattttttccagcataaagagatgataagtgctcaagagatt
gataacataattgctcaagttgatattcctataaaatcaaatagacaaactgagcgtttc
tcaaattcacactggaagttggtttacctaatccaaaatcctgacctggaatttcaagcg
acagttattgagaaattagaaaaaggtagattaatggtttctattgcagctttagcgatg
actaaaaaactttctgtcagcggtaagtatgatttaaatgatcaaataaatttacaaaac
acctcagtaaaccttgttacacaagaggctttctttagagttattgaagaaaattaa
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