Francisella cf. novicida Fx1: FNFX1_0596
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Entry
FNFX1_0596 CDS
T01937
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fcf
Francisella cf. novicida Fx1
Pathway
fcf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FNFX1_0596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcf03400
]
FNFX1_0596
Enzymes [BR:
fcf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
FNFX1_0596
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
FNFX1_0596
DNA repair and recombination proteins [BR:
fcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FNFX1_0596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
LPD3
Motif
Other DBs
NCBI-ProteinID:
AEB27544
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All DBs
Position
complement(598935..599759)
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AA seq
274 aa
AA seq
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MPELPEVETVKRGLIKTIIDKKIFDIEINTDKLRYPIDKDQLVKIKNKVVKEIQRRGKHL
IIFIEDDLQLIIHLGMSGIIKVIDSTKYNKIKHDHIVVTLSDNLFLVYNDPRKFGYWLVN
TNHTPLEHRVLVSHGVEPLTADFNSDYLVSKLKQTSRKIKQTIMDNNIVVGVGNIYASEA
LFDSNILPTRASNTITKKEAANLVSSIKKILEKAIIQGGTTLKDYKNTEGKPGYFTQQLN
VYGRNDQQCYVCNTKIQSLVIAQRNTFFCKKCQK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagtagaaacagtaaaaagaggcttaattaaaactattatcgat
aaaaagatatttgatattgagattaataccgataagcttcgctaccctattgataaagac
caattagtaaaaattaaaaataaagtagtcaaagaaatacaacgcagaggtaagcattta
ataattttcattgaagatgatttacaattaattattcacttaggcatgtctggaattatt
aaagttatagactcaacaaaatacaataaaatcaaacatgatcacatcgttgtaacgcta
tcagataatctatttttagtttacaatgatccacgtaaatttggttattggttagtaaat
actaatcacacacctcttgaacatagagttttagtatcacatggtgttgaaccactaaca
gctgattttaatagtgattatctagtttctaaacttaaacaaacatcaagaaaaatcaaa
caaacgattatggataataatattgtcgttggggtgggtaatatatatgctagtgaggcg
ctatttgatagtaatatcctaccaacaagagcttctaatactattactaaaaaagaagca
gctaacctagtatcgtctataaaaaaaatacttgaaaaagctattatacaaggtggaacc
actcttaaagattataaaaacaccgagggtaaacccggttattttactcaacaactaaat
gtctatggtagaaatgaccaacaatgctatgtatgtaatacaaaaatacaaagtctagtt
atagctcaaagaaatacttttttttgtaaaaagtgtcagaaataa
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