Francisella cf. novicida Fx1: FNFX1_1225
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Entry
FNFX1_1225 CDS
T01937
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
fcf
Francisella cf. novicida Fx1
Pathway
fcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNFX1_1225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcf03400
]
FNFX1_1225
DNA repair and recombination proteins [BR:
fcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNFX1_1225
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FNFX1_1225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
Microtub_bd
SWI2_SNF2
AAA_22
eIF3_p135
DUF87
PMT2_N
Motif
Other DBs
NCBI-ProteinID:
AEE87611
LinkDB
All DBs
Position
complement(1248028..1250034)
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AA seq
668 aa
AA seq
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MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL
ILAHNKTLAAQLYSEFKQYFRDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ
MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY
SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRA
TIFPSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG
YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL
VNYGFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQNTVQQVIRPTGLLDPE
VFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDT
VERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRV
ARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPE
MQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITE
IKQKFINL
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattcaacctagtaacaaagtatgctccagctggagatcagcctcaagcaata
caaagtcttgttaatggtataaatactgggttacaacaccaagtattgcttggtgtgaca
ggctctggtaaaacatatactatggcaaatgtcattcaacagactcaaaaaccatgcttg
atattagcgcataataaaactctagctgcacaattgtattctgagtttaaacaatacttt
cgggataatgcagttgagtattttgtgtcatattatgattattatcaaccagaggcttat
gttgcagcatcagatacctatatagaaaaagattcatctgtaaatgagcatattgaacaa
atgcgtttgtcagcaaccaaggcaatacttgaacgaaatgatgtaattatagtcgcaact
gtatcagctatatatggtctaggtgatcctgagcagtatatgcaaatgcttttgcaccta
aaggtaggcgaagagttaggactaaaaaaagcgcaaactaagctggttgaaatgcaatat
tcgcgtaatgatatggattttagtcgtggaagctttcgcgtccgtggagaggttttagat
atcttccctgctgactctgagaaagatgctattcgagtagaattttttgatgatgaaata
gaagcaataagtgtaattgattcattaacctcaaaaaaaattaaatcattacatcgagca
acaattttccctagtactcattatgtggcatctaaagaacgtaaagagatagtcattgag
gaaatcaaaaaagaacttaaagaaagagttaagtattttgaaaaagagggaaaacttctt
gaagctcaaagaatagaacaacgtactaagtatgatattgaaatgattcaagaacttggc
tactgtacaggaatcgaaaattactcaaggttactttctggaagagctcctggtgatcca
ccacctactttgattgattatctgccagagaatgccttagtgatagttgacgagtcacac
gtgacattaccgcagtttggaggaatgtataagggtgatttatcacgtaaatcaaacctt
gtaaactatggtttccgtcttccttctgctttagataataggcctttgaaatttaatgag
tttgagaaactactaccacagacaatttatgtatcagccactccagctaattatgagcta
gaaaagtctcaaaatactgtacagcaagtgattagaccaactggtttattagatcctgaa
gtttttgtaagaccagtagcaatacaggtagaagatgctttatctgagataaataaagca
attgctaaagaagaaagagttttgataacgactttaaccaaaaaaatggcagaaaatctt
acggagtatttatctgaacatggagttaatgtcagatacttacattcagatattgatact
gtcgaaagggtgcagattattcatgatttacgccatggtgtttttgatgtgcttgtcggg
attaaccttcttagagagggacttgatatgccagaagttggagttttattaatttttgat
gcggataaagaaggtttcttacgttctgaaaaatctttaattcagacgattggacgtgta
gcaagaaatcaaaatggtcgagctattttatatgctgatgtagtgacaaaatctatgcaa
aaagctatggatgagactttgcgccgtcgtaaactccaagatgaatataatcaaaaacac
aatatagttccaaaaactattattaagaatattgacgatatgctagacagctctccagag
atgcaaaagcgcgcttataaaaataatttgcgcttaaaggttgatgatgttgatgtttcg
gctatactaggtatgactgaagctacgaaggttatcaaagctctcgaaaagcgtatgcga
gcttatgcaaaagagctagaatttgaaaaagctacaactattagagacaagataactgaa
ataaagcagaagtttattaacttataa
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