Francisella cf. novicida Fx1: FNFX1_1469
Help
Entry
FNFX1_1469 CDS
T01937
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fcf
Francisella cf. novicida Fx1
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcf03019
]
FNFX1_1469
Enzymes [BR:
fcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FNFX1_1469
Messenger RNA biogenesis [BR:
fcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FNFX1_1469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
nSTAND3
HA2_N
AAA_19
RsgA_GTPase
T2SSE
NACHT
ABC_tran
NTPase_1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEE87855
LinkDB
All DBs
Position
complement(1511480..1515502)
Genome browser
AA seq
1340 aa
AA seq
DB search
MSHNDFYNFLDKVPTKLRGKYISLIRNKKKSEKNLVSEFEKIITETNQRILPKITYPDLP
VAERVDDIKKLLQDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAARSI
ASRIASEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDEAH
ERSLNIDFLLGCIKKILPFRPDLKVIITSATIDHQKFINFFQNAKDIIISGRTYPVEIRY
QNDEDFDEFSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQNLRFTEVLPLFSR
LSNKDQNKIFNPEGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRLPI
EKISQASANQRAGRCGRLSAGICIRLYSEEDFNNRKEYTEPEILRTNLASVILQMLFLKL
GSIQDFPFIDAPDARFVKDGFKLLFELQAISELNYSKPKITDDGMKMAVMPLDPKLAKIV
IEGYRQNTLREIVSIVSFLSVQDPRERPLNLQQKADEKHSIDKDKSSDFVAILNLANRLN
SDLKGLSNREKKEYFKKNFISPVRFNEWNDIYRQIIEVIHGFGWKLNSQLVIKKDSSDSE
LDLESFEHRRQSHDNEILKQVHNDRQILTNSSNIKINHHSHESRNLIANDQNLKDTRLHG
YDSGRAMINYENLHKAIASGFLSNIGFNYENAEYLGARGLKFFIFPGSSQFKSKPKWILA
SEIVETTKTYARNVAKIEPEWLESLASHLVKKHYDEPVWSKKRRAVIVNERVTLYGLEIV
SKRVVQYSKINPREAREIFIREALVNGDFDSKAYFYQQNLKLINQVEDLENKSRRKDILV
DEQTMFEHYDAFIPDEVCDGVTFDKWLKTVRKAQQQKFIFGLESLMQHDAKEITQQKFPD
VLTIGDMHLPLEYNFDPLDERDGATVTIPIVFINNISSAVLEWGVYGFLYDKIVALLRAL
PKNIRKNCVPVPTYAQAIFESLDFDKDRYTPLKSVIAKHITRIVGFVVDETVWQNEELEK
YLVLNIKVVDEHGKTLALGKDINTLKQKLKNLVNKPKQEVDEKIYYDWDFADIALTNQIK
EYGIVVKVYNCLEEYKGGVKLSYKATLAEAQSCMKRALKRLIKIRIQNQLSQKIKNNDLT
SLSMSLKLSDSKDNVVDKAIDLSFFDNIELPYTKGDFERFYALGMQKFVSNKSKVEALLL
EITKFKIQLEKKLNVKKIPLNFIELFTAVRNELNELFTDNYLSQPMIYLQRYKYYIQALE
NRLDKAKLNLQRDRIYQLEADELKAKLAKKLVTKHLSTGDEEVTKIRFLIKELWISWYLQ
NVKTSESVSVKKILVYINQI
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcataatgacttttacaatttcttagataaagttcctactaaattgcgtggtaaa
tatatttcactcattagaaataaaaagaagtccgaaaaaaatttagtttctgagtttgag
aaaataattacagaaacgaatcaaagaatactgcctaaaataacctatccagatctacct
gttgctgaaagagtcgatgatataaaaaagcttctccaagataatcaagttatagttgtg
gcaggagagacaggctctggtaaatcaacccagcttcctaaaatctgtctagatttagga
cttggtaagcgtggattaattggacacactcaacctagaagacttgcagctagatctatt
gctagtagaattgctagtgaaataggtgatcagtcaaaagtatcttttaaaattcgtttt
tctgatcaaacttctgaaaatactttaataaaagtaatgaccgatggggtattactgtct
gaaatcaagaatgataggtttttgtcgcagtatgaggttattatcattgatgaggctcat
gaaagaagcttaaatattgattttctacttggctgtataaaaaagattttaccatttaga
cctgatttaaaagtaattattacttcagcaacgatagatcatcaaaaatttataaatttt
tttcaaaatgctaaagatattataattagtggtagaacatatcctgttgaaattcgctat
caaaatgatgaagattttgatgagttctcattacaagaaagaatattatatgctcttgat
gagcttggtcgaggagatgttttagtttttttaccaaccgaaagagatattcatgaaaca
ttagcatatttgaacaagcaaaatcttagatttacagaagttttacctttattttcaagg
ttatcaaataaagatcaaaataaaatttttaatcctgaaggttctgtgcgtagagttatt
ttagcgacaaatgttgcggaaacatctttgacagtacctcgtataaagtatgttatagat
tcaggtttagcacgaataagtagatatagctatcgtactaaggtgcaacgcctaccaata
gaaaaaatctctcaagcaagcgccaatcaaagagcgggtcgctgtggtaggttatctgct
ggtatctgtatacgcctttatagtgaggaagactttaataatcgtaaagagtacacggag
cctgagattttacgtactaatttggcatcggttattttacagatgttatttctgaaatta
ggaagtattcaagattttccatttattgatgctcctgatgcaaggtttgtaaaagatggt
tttaaacttttatttgagttgcaagctatttcagaacttaattattcaaagcctaaaatt
actgatgatgggatgaaaatggcagttatgccattagatcctaagttggcaaaaatagtt
attgagggttacagacaaaacactcttagagaaatagtttcgattgttagtttcttgagt
gtacaagatcctagagaaagacctttgaacctccagcaaaaggcagatgaaaaacactca
atagataaagataaatcttctgattttgttgcaatattgaatttggcaaatagactaaat
tctgatttaaagggtttatcaaatagagaaaaaaaagaatatttcaaaaagaactttatt
tcgccagttagatttaacgaatggaatgatatttatcgacaaattattgaggtcattcat
ggatttggttggaagctaaatagtcaacttgtaataaaaaaagatagtagtgattccgag
cttgatctggaatcttttgagcataggcgtcaaagccatgataatgagatcttgaaacaa
gttcataatgacaggcagattttaacaaatagttcaaatattaaaattaatcatcattcc
cacgaaagtaggaatctcatagctaatgatcaaaatttaaaagatacccgtctgcacggg
tatgacagtggtagagccatgataaactatgaaaacctacataaagccatagccagtggg
tttcttagtaatattggctttaattatgaaaatgctgaatatttaggagctagaggactt
aagttttttatctttcctgggtcatcacagtttaaaagtaaaccaaaatggatcctagcg
tctgaaatagttgaaactactaaaacatatgctcgaaatgttgcaaagattgagcctgag
tggttagagagtttggcaagccaccttgtcaaaaaacactatgatgagcctgtgtggagt
aaaaaacgtagagctgtaatagtaaatgaaagggtaacattgtacggcttagagatagtt
tcaaaaagagtggtgcaatactcaaagataaatcctcgagaggctcgagagatttttatt
cgagaagccttagtaaatggtgattttgactctaaagcatatttttatcaacaaaatctc
aagcttataaatcaagttgaagatcttgaaaataaatcacgtcgaaaagatatcttggta
gatgagcagacaatgtttgagcattatgatgcttttattccggatgaagtttgtgatggc
gtaacatttgataaatggctaaaaacagttagaaaagctcaacaacaaaagtttattttt
ggcttagaaagcttaatgcaacatgatgctaaagagattacgcaacaaaagtttccagat
gttttaactattggcgatatgcacttgccattagaatacaactttgatccactagatgag
cgagatggtgcaactgttacaataccgatagtttttatcaataacattagttcggcagtg
ttagagtggggggtgtatggtttcttgtatgataagatagttgctttattgcgagcattg
ccgaaaaatattcgtaagaactgtgtgccagtgccaacttatgctcaagctatatttgag
tcgttagattttgataaagatagatatactcctttaaaatctgtcattgctaaacatatt
acgcgtattgttggattcgtagttgatgagacagtatggcagaatgaagagttagagaaa
tatttagttttaaatataaaagttgttgatgagcatggtaaaacacttgcgctgggtaaa
gatatcaatactttaaaacaaaagctcaaaaacctagttaataaacctaagcaagaagtc
gatgagaaaatttattatgattgggattttgctgatattgctttaaccaatcaaattaaa
gagtacggtatagtagtcaaagtatacaattgtcttgaggaatataaaggtggtgtgaaa
ctgtcatataaagcaactttagcagaagcacagtcttgtatgaaaagggctttgaagaga
cttattaagatacgtatacaaaatcaattatcgcaaaaaatcaaaaataatgatttaaca
agtctatcaatgtcattaaaacttagtgattcaaaagataatgtggttgataaagctatt
gatttgagtttttttgataatattgagctaccatatactaaaggagattttgaaagattc
tatgctttaggaatgcaaaagtttgtttcaaataaatctaaagtcgaagcattactttta
gaaataactaagtttaaaatacagcttgaaaaaaaacttaatgttaaaaaaatcccactt
aattttatcgaactttttacagctgttagaaatgagctaaatgagctttttactgacaat
tatttatcacaacctatgatttacttgcagcgatataagtattatattcaagctttagaa
aatcggttagataaggcaaaactaaatctgcaaagagataggatctatcaattagaggct
gatgagcttaaagctaagctagctaaaaagcttgttactaaacaccttagcactggtgat
gaagaagtaaccaaaattcgctttctgataaaagagttatggatatcttggtatttacaa
aatgtaaaaactagtgaatcagtttcggttaagaagattctagtttatattaatcagata
tag
DBGET
integrated database retrieval system
