Francisella cf. novicida Fx1: FNFX1_1607
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Entry
FNFX1_1607 CDS
T01937
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fcf
Francisella cf. novicida Fx1
Pathway
fcf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FNFX1_1607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcf03021
]
FNFX1_1607
03400 DNA repair and recombination proteins [BR:
fcf03400
]
FNFX1_1607
Enzymes [BR:
fcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FNFX1_1607
Transcription machinery [BR:
fcf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FNFX1_1607
DNA repair and recombination proteins [BR:
fcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FNFX1_1607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
AEE87992
LinkDB
All DBs
Position
complement(1672850..1676926)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTADAAKGRLHSGLEIVLKQSF
PVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIVE
DIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGAFSARIIPYR
GSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSETKTITFNSKGFALR
LDNLSNMKGELLKFDIVDAQDNVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDLVSTLRVA
KDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTLKYDLTRN
TDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGSDKVSKDI
YTLENNDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE
SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGG
LSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVDG
KVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRVQYMDVSA
KQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCII
ARNAGEVAEVDSNRIVIKVDTEKSQTSNLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVE
AGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTC
VARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPE
ERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK
DFDEEFAVIESVVKSSIEQEVVGAKIQKAKGLKKGAILTKEFLATLPFSKWLEISFEDEK
LEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKM
AGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
KIEKTLEKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNLKGGVPIATPVFD
GAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNI
VDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcatacgctgagaaaaaaagaattcgtaaagagtttggggttcttcctcat
atcttagatgtaccatatttgctttctattcaaacagagtcatacaaaaaattcttgact
gcagatgcagcaaaaggaagacttcactctggacttgaaatagttttaaaacagtctttt
cctgttgagagtaaaaatggtcaatatgaacttcactatgttgattatcaaattggtgag
cctacttttgatgaaactgaatgtcaggttcgtggtgctacttacgatgcaccattaaat
gtgaagttaagattagttgtatataataaagatgctcttccaaatgaaaaaattgtcgag
gacattagagaagagtatgtgtacatgggtgatattccgctaatgacaactaatggtact
tttatcattaatgggacagaaagagtggtagtctctcagttgcatagatcaccaggggtg
ttctttagtaaggatgactctgaggaaggagcattctcagcacgtattatcccatataga
ggttcatggcttgattttgaatttgactcaaagggtattatatgggctaggattgataga
aaaagaaaattctgtgctacagttattttaaaagctcttggttatactcaagagcaaata
ttagagaatttttctgagactaagactattacttttaatagtaaaggttttgctcttaga
cttgataacctttcaaatatgaaaggtgaactgcttaagtttgacattgtagatgctcaa
gataatgttattgttaaaaagaataaaaaattaacttcaagagatgttaagaaaattaaa
gatgcaggcgttgactctgtagctattgattttgatttggtcagcactcttagagttgca
aaagatatcgttaatgaagcaacaggtgaagtgatagcttatgctaatgacgatgttaca
gaaagtttattagagtcatgcgtagaagttggcatgcttgaattagaagttattgatttt
ataactactgaaagaggtaggtatatatctgatactttaaaatatgatcttacaagaaat
actgatgaggcacttgtcgagatatataaggtattacgaccaggtgatcctcctgcagca
gcttcagttaaagcattatttgaaggtttattctttattgaaagtagatatagcctttct
gatattggtagaatgaagctaaatgctagattaggttcggataaggtatctaaagatatt
tatactttagaaaataatgatatagttggcgtaattgaagagcttataaatatccgtgat
ggtaaaggtaaagttgatgatattgatcatttaggtaacagacgtgtacgttctgttggc
gagatggttgagaatcagtttagaataggcctctaccgtgtagagaaaggtattcgtgaa
agtatgtctttagtacataaagataagcttatgccaaaagatatcgttaactcgaagcca
atcacagcagcaattaaagaattctttacttctggagcgttatcacaatttatggatcaa
gataacccattgtcagaagttacacataagcgtagaatatctgcattaggtccaggtggt
ttatcacgtgatagagcaggttttgaagtacgtgatgttcatgcaacacactatggtaga
ttatgtccaattgagactccagaaggtccaaatattggtctaattaactcattagcaagt
tatgctcgtgttaatgattatggtttcttagaagcgccatatcgaaaagttgttgatggt
aaggttacagatgaaattgaatacttatctgctatcgatgaagataattatgtaattgct
caagcatcaactaaacttgatgaaaataaccattttgttgaagatcttattcaatgtcgt
tctggtggtgaggcaatatttactgagtcaagtagagttcagtatatggatgtttctgct
aaacagatggtttcagcagctgcggcactaattcctttccttgagcatgatgatgctaac
agggtattgatgggtgcaaacatgcaacgtcaagcggtaccgactcttaaatctgagaag
cctttagtcggtacaggtatggagaagattgttgctagagattctggtaattgtattatc
gcaagaaatgctggtgaagtggctgaagttgattctaacagaatcgttattaaagtagat
actgaaaaatcacaaactagtaatttggttgatatttatagtttaactaaatttaaacgc
tcaaacaaaaacacttgtattaaccagcgtccaatagtaaatgtgggtgataaagtagaa
gctggtgatattttagcggatggttttgcaactgattttggcgaattgtctctagggcat
aacttgatggttgcttttatgccatggaatggttataactttgaggattcgatcttacta
tctgaaagaatagtaaaagatgataagtatactagtatccatattgaagagttcacatgt
gtggctcgtgatactaagcttggtcctgaagagataactgcagatattccaaatgttagt
gaatcaagtcttgctaagcttgatgagtcaggaatagttcatattggcgctaatgtcgaa
gctggcgatattttggtagctaagattactccaaaagctgagcaacaactaactcctgaa
gagagactacttagagcaatctttaatgaaaaagcatcaaatgttgctgatagttcatta
agaatgccaagtggtacttctggtacggttattaatgttcaagtatttgagaatgacaaa
ggcggtaaaagtaagcgagcgcttaagattgaaaaagaactgatcgataaagctcgtaag
gattttgatgaggagtttgcagtaattgaatctgtagtcaaatcatcaattgagcaagag
gttgttggtgcaaaaatccaaaaagcaaaaggtcttaaaaaaggtgctatccttacaaaa
gaatttttagcaacgctacctttctctaaatggctagaaatttcttttgaggatgagaaa
cttgaagagaaagttcaaaatgctagagagtattatgaggaagctaaaattgcaatagat
gctaaatttgaagctaagaaaaaatctattactcagagtaatgagctatctccaggtgtg
cttaagactgttaaagtttttgttgcgattaaaaagcgtatccagccaggtgataagatg
gctggtcgtcatggtaacaaaggtgtggtttcacgggtattaccggttgaagatatgcca
tatatggaagatggtactcctgtagacgtttgtctaaatcctttaggtatcccatcacgt
atgaacattgggcagattttagaagcacacttaggattggcttcatatggtttaggtaaa
aaaatcgaaaaaactctagagaaaactagaaaagcagctgaactaagaaagactttagaa
gaagtatataatagcgttggcgataagaaagttaatcttgaggctttaaatgacgaagag
atactaactctttgtgacaacctaaaaggtggagtaccaatcgctacaccagtatttgat
ggtgctaaagaagaagacattaaatcactactgaaaataggcggctttgcaactaatggt
cagatgaagctttttgatggtcgtactggtaagccttttgatagacatgtaactgttggt
tatatgtatatgctaaaactagatcacttagtagatgataagatgcatgcaagatcaact
ggctcatatagtctagttacgcagcagccattaggtggtaaagcacagtttggtggacaa
agattcggtgagatggaagtttgggcattacaagcatatggtgctgcttatacattaaga
gagatgctaacagttaagtcagatgacatagcaggtagatctaaaatgtataagaatata
gttgatggtaagttgactatgaatgtagatgttccagaatcattcaatgttttaagaaat
gaagttagagcattgggtatagatatggattttgactattcatctgaggaagaataa
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