Flavobacterium cupriresistens: LNP23_04655
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Entry
LNP23_04655 CDS
T10329
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fcg Flavobacterium cupriresistens
Pathway
fcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP23_04655 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcg03019
]
LNP23_04655 (rnr)
03016 Transfer RNA biogenesis [BR:
fcg03016
]
LNP23_04655 (rnr)
Enzymes [BR:
fcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LNP23_04655 (rnr)
Messenger RNA biogenesis [BR:
fcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LNP23_04655 (rnr)
Transfer RNA biogenesis [BR:
fcg03016
]
Prokaryotic type
tRNA degradation factors
LNP23_04655 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
DUF7430
HTH_11
Motif
Other DBs
NCBI-ProteinID:
UFH43510
LinkDB
All DBs
Position
complement(1051613..1053790)
Genome browser
AA seq
725 aa
AA seq
DB search
MSKKIRKPIKNEKDFSSKIVKILSQSPNKAFNYKQIGAKLELDDTKSRNQIIKDLKILAA
SKKIIESEPGKYLVKAESQDYYEGTIDMTSRKTAYFICPDFTEDVFIPTNNLNRALDKDK
VKVYVYNRRKGKRPEGEVIEVVERNKTDFVGVIDIQANFAFVSTANPKMYTDIFIPKDKI
GEAENGDVVLVTIEDWPKRADSPFGSVVRVLGKPGEHNTEIHAILAEYGLPADFPVEVEV
YAQKIDTTIQEAEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVS
YYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAVFEVSENA
QVINQWFGRTVIYSDQRFAYEEAQYIIETKDHTIPVDISITGSSYLVSDEIVQATLKLDE
LAKILRRKRMANGAISFDKVEVKFNLDEQGEPEGVYFKVSKDANHLIEEFMLLANRKVAE
YIGKQKKTFVYRIHDEPNEDKLIAMQSVIAKFGYKIDFRNKGDISKSLNALMEEVNGKKE
QNLIDTLAIRSMSKAKYSTENIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQYYLDKGAS
VDEEVYETKCLHCSNMESLATNAERDSIKYMQVKYMQDHQDEEFLGVISGVTEWGIYVEI
VSNKCEGMVRIREIKDDYYTFDEKQYALVGATSNSILQLGDEIYVKVKNADLVKKQLDFH
FLRRA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaaaattagaaagccgataaaaaatgagaaagatttctccagtaagatagta
aagattttatcgcaaagcccgaataaagcatttaattacaaacagataggagcaaagtta
gaacttgatgataccaaaagcagaaaccagattattaaagatttaaagattctggctgct
tcaaaaaaaattatagaatctgaacccggtaaatatttagtaaaagcagaaagtcaggat
tactacgaaggaacaattgatatgacaagccgtaaaacagcttatttcatttgccctgat
tttacagaagatgtttttattccaacgaataatttgaatcgtgccctggataaagacaaa
gttaaagtatacgtttacaaccgaagaaaagggaaaagacctgaaggtgaagtaattgaa
gtggtagaaagaaataaaactgattttgtcggagttattgacattcaggccaattttgcc
tttgtttctacagcaaatcctaaaatgtataccgatatttttattccaaaagataaaata
ggcgaagcagaaaatggtgacgttgttttggttaccattgaagattggccaaaaagagcc
gatagtccgtttggatctgtggttcgtgttttaggaaaacccggagaacacaatacagaa
attcatgctattttagcagaatacggtttgccggcagattttccggtagaagtagaggtt
tatgcccaaaagatagacactaccattcaggaagctgaaattgcaaaacgtcgtgatatg
cgtgatacgcttacgtttacgatagatccaaaagatgcaaaagattttgatgatgccttg
tctttcaaaaagttagagaatggaaattatgaaatcggaatccatattgccgatgtttcc
tattatctggaagaaggaacaattttagatgatgaagcctatcaacgtgctacttcggtt
tatttagtagacagggtagtgccaatgcttccggaagttttatctaattttgcctgttcg
ctacgtccgaatgaagaaaaatatacattctctgctgtttttgaagtttcagaaaatgca
caagttatcaaccaatggtttggaagaactgtaatttattctgatcagcgttttgcttac
gaagaagcacagtatatcattgaaacaaaagatcatacgatcccggttgatatttcaatt
accggaagttcgtatttagtttcagatgaaattgttcaggctactttaaagttagatgaa
ttagctaagattctgagaagaaaaagaatggccaatggtgcgatttcgtttgataaagta
gaagtaaaattcaatttagacgaacaaggagaaccggaaggcgtttatttcaaagtttca
aaagatgccaatcatctgattgaagaattcatgcttttagccaaccgaaaagtggccgaa
tacattggaaaacaaaagaaaacatttgtttacagaattcacgatgagccaaatgaagac
aaactaattgccatgcaatcggttattgcaaagtttggttataagattgattttagaaac
aaaggagatatttcgaaatcattgaatgctttgatggaagaagtaaatggtaaaaaagag
cagaatttaattgatactcttgccattagaagtatgagtaaagccaaatattcgacagag
aatattggacattatggtctggcttttgattattacagtcactttacttcgccaattcgt
cgttatccggacgttatggtgcatcgtttactgcagtattatttagacaaaggagcttct
gtggacgaagaagtgtatgaaacaaaatgtttgcattgctcgaatatggaaagtttagct
actaatgcggaacgtgatagtattaaatacatgcaggtgaaatacatgcaggaccatcag
gacgaagagtttttgggtgttatttccggtgttacagaatggggaatttatgttgaaatc
gtttcgaacaaatgtgaaggaatggttagaattcgcgaaataaaagacgattattatact
tttgatgaaaagcagtatgccttagttggtgcgacttcaaacagtattttacaattagga
gatgaaatttacgttaaagtaaaaaatgcagatttagttaagaaacaattggattttcat
tttttaagaagagcttaa
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