Flavobacterium cupriresistens: LNP23_09920
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Entry
LNP23_09920 CDS
T10329
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fcg Flavobacterium cupriresistens
Pathway
fcg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LNP23_09920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcg03021
]
LNP23_09920 (rpoC)
03400 DNA repair and recombination proteins [BR:
fcg03400
]
LNP23_09920 (rpoC)
Enzymes [BR:
fcg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LNP23_09920 (rpoC)
Transcription machinery [BR:
fcg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LNP23_09920 (rpoC)
DNA repair and recombination proteins [BR:
fcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LNP23_09920 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Tom22
Motif
Other DBs
NCBI-ProteinID:
UFH44515
LinkDB
All DBs
Position
2249144..2253454
Genome browser
AA seq
1436 aa
AA seq
DB search
MMNNRNNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCER
IFGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSL
PNKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQRLDFLTEEEYLNILDTLPQ
ENLYLDDMDPNKFVAKMGAECIMDLLARIDLDELSYQLRHSANNETSKQRKTEALKRLQV
VESFRESNLNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRL
KRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFR
QNLLGKRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKK
IIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNA
DFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIS
TPEHIILGQDLTFYSAEEVNIALNEGRLELNARVRIRAKDFNEAGELVYKIIQTTAGRVL
FNEVVPEAAGYINDVLTKKNLRDIIGHILSVTNVPTTAAFLDNMKDMGYKFAFRGGLSFS
LGDIRIPEQKTKLIADAREQVEGISVNYNMGLITNNERYNQVIDVWTSANAQLTELAMKN
IREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKE
GLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVSAL
KKNEEIVESLGERILGRVALQDVINPLTNEVIVQSGQQITEAIMKVIEASPIERVEVRSP
LTCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGIS
EESSIVTRFNGRLEIEDLKTVKGEDSEGNAVDIVVSRSTELKLVDEKTGIVLNTHNIPYG
SSIFVKDGEVVTKGSVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKV
ISEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGD
ITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSS
QILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFE
VVIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVQNDKLYGMKVVEDSGDSAVLKPGQIIT
PRDLRDENSLLKRNDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLN
EAAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaacaataataaagataaaaatccggtaaaaagatttaataaaatc
tctattggattagcttcacctgaatctatcttgaaagaatcaagaggagaggttttaaag
ccagaaacaatcaactacagaacacacaaacctgaaagagacggacttttctgcgaaaga
atcttcggacctgttaaggattttgagtgtgcttgtggtaaatataaaagaattcgttac
aaagggatcatctgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtcgtgac
agagtaggacacatcaaccttgttgtgccaattgctcacatctggtatttccgttctctt
ccaaacaaaattggttatatccttggtcttccatctaagaaattagatatgatcatttac
tacgaaagatacgtagtaattcaagctggtattgctaaaaatgcagatggagaatcctta
caaagattagatttcttaacagaagaagaatatttgaatattttagatactcttccacaa
gaaaatctttatttagatgatatggatcctaataaatttgttgccaaaatgggagcagaa
tgtattatggatttattagcgcgtattgacttagatgagttatcttaccaactaagacac
agtgctaacaacgaaacatctaaacaacgtaaaactgaagcattaaaaagattacaagtt
gttgagtctttccgtgagtctaacttaaaccgcgaaaaccgtccggaatggatgattatg
aaagtggttcctgttattccaccagaattacgtccgcttgtgccacttgatggaggtcgt
tttgcaacttcagatttaaatgatttataccgtcgtgtaatcatccgtaacaaccgtttg
aaaagattaatggagattaaagctcctgaagtaatcttaagaaacgaaaaacgtatgtta
caagaatctgtagattcattatttgataacactcgtaaagcttctgctgttaaaacagaa
tctaacagaccattaaaatcattatcagattcattaaaaggtaaacaaggacgtttccgt
caaaaccttttaggaaaacgtgtggattattctgctcgttcggtaattgttgttggtcct
gaattaaaattattcgaatgcggattgccaaaagatatggcagctgaattatacaaacct
ttcgttatccgtaaattgattgaaagaggtattgttaaaacagtaaaatcggctaagaaa
atcatagacaaaaaagagccggtagtttgggatatccttgaaaatgtaattaaaggacat
cctgtattacttaaccgtgctcctacgttgcacagacttggtatccaggctttccaacca
aaattaattgaaggaaaagcaatccagttacacccgttagtttgtacggcatttaacgcg
gattttgatggggatcagatggcagttcacttgccattaggaccagaggctattttagag
gcacaattattaatgttggcttctcacaatattcttaaccctgcaaatggtgctccaatt
acggtaccttctcaggatatggtcttgggtctatattatatgaccaaagaacgtatctct
acaccagaacacattattttaggtcaagacttaacattctattctgctgaagaagtaaat
attgcactaaacgaaggaagattagaattgaatgctcgtgtaagaattagagcaaaagat
tttaatgaggctggagaattggtgtataaaattatccaaacaactgcaggacgtgtatta
tttaacgaagtagtaccggaagcagcaggatatatcaatgacgtattgactaagaaaaac
cttagagatattatcggacacattttaagtgtgacgaatgtacctactacagcagctttc
ttggacaatatgaaagacatgggttataaattcgcatttagaggaggtttatcattctct
ttaggtgatattagaattccagaacaaaaaacaaaattaattgcagatgccagagagcaa
gttgaaggtatttctgtaaattataacatgggtcttatcacgaataacgagcgttacaac
caagttattgacgtttggacttctgcgaatgcacagcttacagaattagcaatgaaaaat
attagagaagaccaacaaggtttcaactctgtatacatgatgcttgactctggagcgagg
ggttctaaggagcagattcgtcagttaacaggtatgcgtggtttgatggctaagcctaaa
aaatctactgccggtggtggtgagattattgaaaacccgattctttctaactttaaggaa
ggtctttcgatccttgagtacttcatttctactcacggtgctcgtaaaggacttgcggat
acggctcttaaaacggctgatgccggatacttaacaagaaggcttcatgacgtttctcaa
gatgttattgtaaacatcgaagattgtggaactttaagaggtgttgaagtatctgctttg
aagaaaaatgaggaaattgttgaatctttaggagaaagaattttaggacgtgttgcgttg
caagatgttattaatcctcttactaatgaagtaattgttcaatcaggtcaacaaatcact
gaagcaattatgaaggttatcgaagcttctcctattgaaagagtagaagttagatctcca
ttaacttgtgaggctttaaaaggtatttgtgcgaaatgttacggtagaaacttagctact
ggtaagatgacacaaagaggtgaagcagttggagttattgcagctcaatctattggtgag
ccaggtacacagttaacacttcgtacgttccacgttggaggggttgcaggaggtatttct
gaagaatctagtattgttacaagattcaacggtagacttgagattgaagatttaaaaaca
gttaaaggagaagacagcgaaggtaatgcagttgatatcgtggtatcacgttcaacagaa
ttaaaattagttgacgagaaaaccggaatcgttttaaatacacataatattccttacgga
tctagtattttcgttaaggatggtgaagtagttactaaaggatctgtgatctgtaagtgg
gatccatataatggtgtaattgtttctgaatttacaggtaagattgcttacgaagattta
gagcaaggacaatcgttcatggttgaaatcgatgagcagacaggtttccaggaaaaagta
atttctgaagcaagaaataaaaaattaatcccaactttattggtttacggtaaagaaggt
gaattgattcgttcgtataacttaccagtaggggcacacttaatggttgagaatggtgag
aaaattaaagcaggtaaagtattggtaaaaatcccacgtcgttcttctaaagcaggcgat
attacgggaggtcttccaagaattaccgagttacttgaggctcgtaacccttctaaccca
gcagttgtttctgaaattgacggtgttgtttcttttggaaaaatcaaaagaggtaaccgt
gaaattgttatcgaatctaaatttggtgagattaaaaagtatttagttaaactttcaagc
caaatcttagtacaagaaaatgacttcgtaagagcaggagtgccattgtctgacggtgca
attacaccggacgatattttaagaattcaaggaccggctgctgttcaacagtacttggta
aatgaaattcaagaggtataccgtttacaaggggtaaaaattaatgacaagcactttgag
gtagttattcgtcaaatgatgcgtaaagtaagagttcaagatccaggagatactttattc
ttagaagatcaattaattcacactaaagactttatcgttcaaaatgataaattatacggt
atgaaagtagttgaagattcaggagattctgctgtattgaaaccaggtcagattattaca
cctcgtgatttacgtgatgaaaactcattgttgaaacgaaatgataaaaatctggttgta
gccagagacgtaattactgcaactgcaacgccagttttacaaggtattacaagagcttcg
ctacaaactaaatcattcatctctgctgcttctttccaagaaacaacaaaagtacttaac
gaagctgctgtagctggtaaagtagatgatttagaaggattgaaagaaaatgtaattgtt
ggacacagaatccctgccggaactggtatgagagaatacgataacactatcgttggttct
aaagacgattacaatgaaatgatggctaataaagaagaatatatttattaa
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