Flavobacterium cupriresistens: LNP23_12620
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Entry
LNP23_12620 CDS
T10329
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcg Flavobacterium cupriresistens
Pathway
fcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP23_12620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcg03019
]
LNP23_12620
03009 Ribosome biogenesis [BR:
fcg03009
]
LNP23_12620
Enzymes [BR:
fcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LNP23_12620
Messenger RNA biogenesis [BR:
fcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP23_12620
Ribosome biogenesis [BR:
fcg03009
]
Prokaryotic type
rRNA helicases
LNP23_12620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UFH40649
LinkDB
All DBs
Position
complement(2956678..2958591)
Genome browser
AA seq
637 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRIADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGRLGTSIVIVTKSELRKISSIERI
IKQKFEEKVIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEELSKEELIKKM
VSVEFNRFIAYYKKNRDISSQAGERRERSDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTEKVMEVLNNVQLEGRRINVEISKNDGG
GRRDHNGRSGGGRSSGGPRREGSFAPRREGSGGGGFRSDRNSAPREGGFRSDRNSSAPKR
EGGFRSSTPRTEGGSDRAPRRSESFGDSPRPRRPRRD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaacagaaatacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgaaaaaggt
attaatgtggtagcagtttacggcggggctagtattacagagcaagccagagaaattaaa
agaggagctcagatcattgtagctactccggggagaatgcaagacatgatcaacagaggt
ttagttaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgttgaac
atgggattttatgaggatatcgtatctattttatccgatactccagacgaaaaaagcaca
tggttgttctctgcaactatgccacaagaggtagccagaattgcaaaacaattcatgagc
gagcctgtagaaattacagtaggtgctaagaactcaggttctgcaactgtttctcacgaa
ttttacttagtaaatgcacgtgaccgttacgaagctttaaaacgtatcgccgatgctaat
ccggacattttctcagtagtattctgtagaacaaaacgtgatacacaagcggtagctgaa
aaattaatcgaagatggatacagcgctgctgcgttacacggagatttatctcaagcgcaa
cgtgatggtgtaatgaaatctttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgcacgtggaattgacgttgataatattactcacgtagtaaactatcaattacct
gacgagattgaaacttacaatcaccgttcaggacgtacaggtagagctggaagattagga
acttctatcgtaattgttactaaaagtgaattgcgtaagatttcttctatcgaaagaatt
atcaaacaaaaattcgaagagaaagttattccatccggaatcgaaatctgcgaaattcaa
ttattacacttagctaataaaattaaagatactgaggtagatcacgaaattgacaactac
ctaccggctatcaacaacgttcttgaagagttatctaaagaagagttgatcaaaaaaatg
gtatctgtagaatttaatcgttttatcgcttactacaaaaagaacagagatatttcatct
caagcaggagaaagacgcgaaagaagtgattctgaaccaagagaattcaacaataatgga
gcagttcgttatttcgtaaacatcggttcaagagacaacttcgattggatgtcacttaaa
gattacttgaaagaaacattagacttaggtcgtgatgacgttttcaaagtagacgtaaaa
gaaggtttctctttctttaacactgatcctgagcacacagaaaaagtaatggaagtatta
aacaacgtacaattagaaggacgtcgtattaatgttgaaatttctaaaaatgacggtggc
ggaagacgtgatcataatggacgttctggtggcggaagaagctctggaggaccaagaaga
gaaggaagtttcgctccaagacgtgaaggttctggtggtggtggattcagaagcgacaga
aactctgctcctagagaaggtggtttcagaagcgacagaaattcatctgctccaaaaaga
gaaggtggtttcagaagttcaactccaagaactgaaggtggttctgacagagccccaaga
cgttctgaaagctttggtgattcgccaagaccaagaagaccaagaagagattaa
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