Flavobacterium cupriresistens: LNP23_19940
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Entry
LNP23_19940 CDS
T10329
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fcg Flavobacterium cupriresistens
Pathway
fcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP23_19940 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcg03021
]
LNP23_19940 (rho)
03019 Messenger RNA biogenesis [BR:
fcg03019
]
LNP23_19940 (rho)
Transcription machinery [BR:
fcg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LNP23_19940 (rho)
Messenger RNA biogenesis [BR:
fcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LNP23_19940 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
NACHT
AAA_22
AAA
OB_RNB
Rho_N
Motif
Other DBs
NCBI-ProteinID:
UFH42067
LinkDB
All DBs
Position
complement(5052460..5054301)
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AA seq
613 aa
AA seq
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MFDISALKEMKLAELQEIAKLAKTIKFNGVKKETLISQILAHQEATVAPPVNTVADAEIV
DDKPKRARIVPVKKAPISKNASASKNAPVLEFDKVEEAPVIAATPEVPTETPKEEEAAEN
KVVEKKGPKIVKFNKSAYEKKVAQQKEKEAAKEFVNEEVNENSDASAPIAERTETPAPTT
EKAETAAPTKKINPNQTKNQNPNQNQNPNQNPNQNGNGNGNSTNQNPNHKNKKNNFRDSD
FEFDGIIESEGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVR
PPKEGEKFFPLVRVLKINGHDPQVVRDRVSFEHLTPVFPSEKFKLAEKGSSVSTRIIDLF
SPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANHPEVYLIVLLIDERPEEVTDMQRSVRG
EVIASTFDREPQEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVL
SGGVDANALQKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQL
DRKIANKRIFPAIDLTSSSTRRDDLLLDEKTLQRMWIMRKYLSDMNPVESMDFVNDRFKK
TRNNEEFLISMND
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttctgcattaaaagaaatgaagcttgctgagcttcaagaaatagctaag
ttagctaaaactataaagtttaatggcgttaaaaaagagactttaatcagtcagatttta
gcgcaccaagaagcgactgtagcgccgccagttaacactgtggccgatgcggaaatagtg
gatgacaaacctaaaagagcaagaattgttccggtcaaaaaagcgccgattagtaaaaac
gcgtcagcgagcaaaaatgcaccggttctggaatttgataaagtagaggaagcccctgtg
attgcagcaactccggaggttccaactgagactccaaaagaagaagaggctgcagagaat
aaagttgtagagaaaaaaggacccaaaattgtaaaatttaataagtcagcttacgagaaa
aaggtcgctcagcaaaaagaaaaagaagcagcaaaagaatttgtcaacgaggaagttaat
gaaaatagtgatgcttcggctccaatagcagaaagaacggaaactcccgctccgacaact
gaaaaagcagaaacggctgctccgacaaaaaaaataaatccgaatcagactaaaaaccag
aatccgaatcaaaatcaaaacccgaatcagaatccaaatcaaaacgggaacggaaatggt
aacagtacgaatcagaatccaaatcataaaaataaaaagaataatttcagagattcagat
tttgaatttgacggaattatagaaagtgaaggtgttcttgagatgatgccagacggatat
ggtttcttacgttcatcagattataattatttagcgtctccggatgatatttatttatca
acttcacaaatcagattattcggtttaaaaaccggtgataccgtaaaaggggtggttcgc
ccaccaaaagaaggcgagaaatttttccctttagttcgtgtactaaaaattaatggtcac
gatccgcaagtagttcgcgatagagtttctttcgaacacttaactccggtttttccttca
gaaaaattcaaattagccgaaaaaggcagttccgtttcaacccgtattattgatttgttt
tctccaattggaaaagggcaacgtggtatgatcgtagctcaaccgaaaaccggtaaaaca
atgttactaaaagacattgccaatgcaattgcagccaaccaccctgaagtttatttgatc
gttcttcttattgacgaacgtcctgaggaggttactgacatgcaacgcagtgttcgtgga
gaagtaatcgcttcgacttttgacagagagccacaagaacacgtaaaaattgccaatatt
gtacttgaaaaagcaaaacgtttggtagaatgtggccatgatgtggttattttattagac
tctattacgcgtttggcaagagcgtacaatacggttcagcctgcttcaggaaaagtttta
agtggtggtgttgatgcgaatgcattgcaaaaaccaaaacgtttctttggtgcggccaga
aatgtagaaaacggaggttcattaagtatcatcgctactgcattgacagaaacaggttct
aaaatggatgaggtaatctttgaagaatttaaaggaaccggtaatatggagttacaattg
gatcgtaaaattgcgaacaaacgtattttccctgctatcgatttaacgtcttcaagtaca
cgtcgtgatgatttattattagacgaaaaaacactgcaaagaatgtggatcatgcgtaaa
tatctatcggatatgaacccggttgagtctatggattttgtaaatgaccgtttcaaaaaa
accagaaataacgaagagtttttgatttctatgaatgactaa
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