Falco cherrug (Saker falcon): 102052203
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Entry
102052203 CDS
T02911
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fch
Falco cherrug (Saker falcon)
Pathway
fch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102052203 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fch03019
]
102052203 (MTREX)
03041 Spliceosome [BR:
fch03041
]
102052203 (MTREX)
03009 Ribosome biogenesis [BR:
fch03009
]
102052203 (MTREX)
03016 Transfer RNA biogenesis [BR:
fch03016
]
102052203 (MTREX)
Enzymes [BR:
fch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102052203 (MTREX)
Messenger RNA biogenesis [BR:
fch03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102052203 (MTREX)
Spliceosome [BR:
fch03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102052203 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102052203 (MTREX)
Ribosome biogenesis [BR:
fch03009
]
Eukaryotic type
Pre-60S particles
Helicases
102052203 (MTREX)
Transfer RNA biogenesis [BR:
fch03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102052203 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102052203
NCBI-ProteinID:
XP_005438732
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADAFGDELFSVFEDDSTAAAASGAKKSKTGATEGARKPGKRLEEKSSVAATGKPKGEAE
VCSTEDVVLAKKIKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDPERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQRGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVEKVNN
LEGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGD
DFGWGVVVNFSKKSNVKPNSGELDPLYIVEVLLHCSKESLKNSATEAAKPARPDEKGEMQ
VVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAMDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECARRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggagatgagctcttcagcgtgtttgaggatgactcgaccgccgcc
gctgcctctggggccaagaagagcaaaacgggcgccaccgagggcgccaggaaaccggga
aaacgactggaggaaaaatcttcggtagctgcgacagggaagcccaaaggggaggctgag
gtctgtagtaccgaagatgttgttttggcaaagaagataaaattggaggatgttgtatca
gaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgtt
gaaggctgtacacatgaggttgcacttccagcagatgaagacttcacaggtttgaagcca
agaactggaaaagctgcaaaagagtatccgtttattcttgacgcctttcagagagaagct
attctttgtgttgataataaccagtctgtgttagtgtcggctcatacgtcagctggtaaa
actgtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggagatgtcactattaatcctacagcttcttgtctggtaatg
acaacagagattttgagaagtatgctctacagaggttctgaggttatgcgagaggttgcg
tgggttatttttgatgaaattcactatatgagagatccagaacgcggtgtggtttgggaa
gagacaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgacccactccactgcagcattatatattcccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtacttagagatgcaggagacctagcaaaaggggaccagagaggcaggaaaggagga
acaaaaggtccttcaaatgtttttaaaattgtgaagatgatcatggaaaggaatttccaa
cctgtcattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgca
attgattgtctctcagatgaagataaaaagcttcctcaggttgagcacgtacttcctctt
ctgaagcgaggaattggtatccatcatggcggtctgcttcctatcttaaaagaaaccata
gaaattcttttctctgagggcttaataaaggccttatttgcaacagagacttttgctatg
ggaattaatatgccagccaggactgtgctatttacgagtgccagcaaatttgacggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaatt
ggcaagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacgtac
aacatggtattgaacttgcttcgagtagaggaaattaatcctgaatacatgttagaaaaa
tccttctatcagttccaacattacagaactattccagaaatagtagaaaaagtgaataat
ttggaaggacagtacaacaaaatagcaattcccaatgaggaaaatgtggtcatatactac
aaaatccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaacca
aagtattgcttgcccttcctacagccaggaagactggtaaaggtgaagaatgaaggtgat
gactttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattct
ggtgaattggacccattatatattgttgaagtgctactacactgcagcaaagagagtttg
aaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgcag
gttgttcctgttttggtacatcttctctcagctatcagcagtgtccgactctacataccg
aaagacctgaggcccattgacaacaggcaaagtgtgttaaaatctatacaagaagtacag
aaacgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagat
caaggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacat
cctcttcacaatgatcccaacttggaaactgtatacacactttgtgaaaaaaaagcacag
attgctatggatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaa
atggatgaactgaaatgccgtaagcgtgttttgagaaggctggggtttgctacatcttca
gatgtcattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgca
ctattaagctgttttgtatttcaagagaattccagtgaaatgccaaaactgacagagcag
ctggcaggaccgcttcggcaaatgcaggagtgtgcaagaagaattgccaaggtgtcagca
gaagccaaactggaaattgatgaagaaaattacttaaattctttcagacccaatctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgat
gtctttgaaggtagcataattcgttgcatgagaaggctagaagaattgctccgtcagatg
tgtcaggctgcaaaagccattggaaacacagagttggaaaataagtttgcagagggaatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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