Falco cherrug (Saker falcon): 102058336
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Entry
102058336 CDS
T02911
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fch
Falco cherrug (Saker falcon)
Pathway
fch03013
Nucleocytoplasmic transport
fch03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fch00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102058336 (UPF1)
03015 mRNA surveillance pathway
102058336 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fch03019
]
102058336 (UPF1)
Enzymes [BR:
fch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102058336 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102058336 (UPF1)
Messenger RNA biogenesis [BR:
fch03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102058336 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102058336 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102058336
NCBI-ProteinID:
XP_027668621
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
LSTDLAFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKS
REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGM
ISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIP
GTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
ttaagcactgaccttgcatttcaggttaatggacctgatggcattctacagaatggagct
gtggatgataatgtggctaaaaccagccagcttctggcagagttgaattttgaagaagat
gaagaagatacctattatacaaaggatcttcctgtgcatgcttgcagctactgtggcatc
catgaccctgcctgtgtggtctactgtaacaccagcaaaaagtggttctgtaatgggcgt
ggaaatacatctggcagccacattgttaatcatcttgtgagagcgaagtgcaaagaggtg
actctccataaagatggacctctaggagagactgtcttggaatgttataactgtggatgt
cgtaatgtgtttctccttggctttattccagctaaggcagactctgtggttgttttgctg
tgcaggcagccatgtgccagtcagagcagtttaaaggatattaattgggacagttcacag
tggcagcctcttatccaagatcgttgtttcctttcatggctggtaaagattccatccgaa
caggaacagttgagagcacgtcagattacagctcaacagattaacaaactggaagaactt
tggaaggaaaatccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagaa
ccacagcatgttctgcttagatacgaagatgcttatcaataccaaaatatatttggtcct
ctagtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacacaagataac
atcacagtgagatgggacttgggcttgaacaagaaaaggattgcttatttcactttgcca
aagactgattcagatatgcgtcttatgcaaggagatgagatctgcttgaggtataaagga
gacctggctcctttatggaaaggaattggtcatgttatcaaagttcctgataattatggt
gatgagatagccattgagctgaggagcagcgttggagcacctgtggaagttactcataac
ttccaggtggattttgtatggaagtcaacttcctttgacagaatgcagagtgctttaaaa
acatttgctgtggatgagacttcagtgtctgggtacatctatcacaaactgttaggtcat
gaggtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggactt
cctgatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagc
cttattcagggtccccctggtactggaaaaacagtgacatcagccacaatagtctatcat
ctggctagacaaggcaatgggcctgtgttagtctgtgctccaagtaatatagctgtcgat
cagttgactgagaagatccatcaaactggactgaaagtggttcgtctgtgtgctaaaagt
cgtgaggcaattgactctcctgtctccttcttggcattacataaccagatcagaaacatg
gatagcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtca
tctgctgatgagaaacgttaccgtgcactgaaacgaacagcagagcgtgaattacttatg
aatgcagacgtgatctgttgcacgtgtgtgggagctggtgatccaagacttgcaaaaatg
cagttccgctccattctgattgatgaaagcacacaggctactgagccggagtgcatggtg
ccagttgtcctgggagcaaaacagcttattcttgtgggtgaccactgccagcttggtcct
gttgtgatgtgtaaaaaggctgcaaaggctggcctgtctcagtctctcttcgagaggctt
gtggtgctgggtattcggccaattcgcctacaagtgcagtaccgcatgcatcctgcactg
agtgcttttccatccaatatcttctatgagggttcactccagaatggtgttactgcagcg
gaccgtgtgaaaaaaggttttgatttccagtggccacagccagataagccgatgtttttc
tatgttacacaaggacaggaagaaattgccagctcaggcacttcttacttaaacaggacg
gaagctgccaatgtggagaagataactacaaagctattgaaagctggtgccaaaccagat
cagattggcattattactccttacgaaggtcaacgatcctatctggtgcagtatatgcag
ttcagtggttccttgcatacgaaactctaccaggaagtggaaattgcaagtgtggatgcc
ttccagggacgtgagaaggactttattatcctttcttgtgtgagggccaatgaacaccaa
ggaatagggtttctgaatgaccccaggcgtcttaatgtagcccttacaagagcaaggtat
ggagtaattattgttgggaacccaaaagcactgtctaaacaaccactttggaatcaccta
ctgaattactacaaagaacagaaggttctggtggagggaccactgaataacctccgggaa
agccttatgcagttcagcaaaccccggaaacttgtcaataccatcaacccaggtgcccgt
ttcatgactactgccatgtatgacgcacgcgaggctattattccaggatctgtctatgac
cggagcagtcaagggcgcccatccaacatgtacttccaaacccacgaccagattgggatg
atcagtgctggccccagccatgtcactgctatgaacattcctatccctttcaaccttgtg
atgccaccgatgccaccgccggggtactttggccaggctaacggaccagctgcaggacgt
ggggcgccaaaaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcct
ggaactagtcagtcaaaccttccgaatagtcaagcgagccaagatgtggtgtcccagcct
ttctcccagggtccactgactcaggggtatatctccatgagtcagccatcacagatgagt
cagcctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaa
tctcagattgacgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaa
catggtggagtgacgggactgtcacagtattag
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