Falco cherrug (Saker falcon): 114014219
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Entry
114014219 CDS
T02911
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fch
Falco cherrug (Saker falcon)
Brite
KEGG Orthology (KO) [BR:
fch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fch03016
]
114014219 (RTCB)
Enzymes [BR:
fch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114014219 (RTCB)
Transfer RNA biogenesis [BR:
fch03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114014219 (RTCB)
Prokaryotic type
tRNA splicing ligases
114014219 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
114014219
NCBI-ProteinID:
XP_014141794
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MVTMVNYQIGYLFGFLFSAGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGN
MAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSK
GVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQ
LGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAME
KAMKRDKIIVNDRQLACARIASAEGQDYLKGMAAAGNYAWGNRSSMTFLTRQAFAKVFNT
TPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQP
VLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIA
IRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggttaccatggtaaattaccagattggttacctgtttggttttcttttttctgcaggt
gcaggtggctttttacctgctatgaaacagattgggaatgtggctgcattacctggcatt
gttcacagatcaataggccttccagatgtccattctggctatgggtttgccattggcaac
atggctgcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggattt
gacatcaactgtggtgtccgcttactgcgtaccaatttggatgaaagtgatgtgcagcct
gtgaaagagcagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaa
ggtgtcatccccatgaatgccaaggatttggaagaagcgctagagatgggtgtggactgg
tctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaaga
atgttgcaggctgatcccaacaaggtctcctcaagagcaaagaagaggggcctgcctcag
ctggggaccctgggagccggaaatcattatgccgagatccaggttgtggatgacatttac
aatgaatatgctgccaggaagatgggcattgaccacaaagggcaggtgtgtgtgatgatc
cacagtggcagcagaggtctgggccaccaagttgctacagatgcgttggtggctatggaa
aaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccaggatt
gcttccgcagagggacaggattacttgaagggaatggcagctgctgggaactatgcatgg
ggcaaccgctcttctatgacttttctaacaagacaggcttttgccaaagtcttcaacaca
accccagatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtg
gagcaacatgtagtggatgggaaggagcggactctgctggtgcacagaaagggatcaacc
agagccttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcct
gtcttgattggtgggactatgggcacctgtagctatgttcttactggcacagagcaaggc
atgaccgagaccttcggaactacttgccatggcgctggtcgtgcactgtctcgagccaaa
tctcgacgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgcc
atccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttataagaatgtg
acagatgtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgaga
cctattgctgttataaaaggctag
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integrated database retrieval system
