Flavobacterium capsici: RN605_00165
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Entry
RN605_00165 CDS
T10574
Name
(GenBank) T9SS type A sorting domain-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
fcj Flavobacterium capsici
Pathway
fcj00040
Pentose and glucuronate interconversions
fcj01100
Metabolic pathways
fcj02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RN605_00165
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RN605_00165
Enzymes [BR:
fcj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RN605_00165
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GFIT
Motif
Pfam:
Pectate_lyase_4
Por_Secre_tail
DUF3244
Motif
Other DBs
NCBI-ProteinID:
WNM21785
UniProt:
A0AA96F5D8
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All DBs
Position
31625..32971
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AA seq
448 aa
AA seq
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MRKIILGFILLTVTGLTGQNINMSAPEGFGAAATGGGNGTPVTVTTYTAFKNALQSTTAA
NRVILVSGTIDCIYTSVTLNNKTIIGLPGARLRNTQITVGNSTTSANNSGILNIKPGSNN
VIIRNLIFEGPGAYDVDGRDNLTNEGTNIWVDHCEFQDGIDGNFDNKGLGDNVTISWCKF
TYLKPAVPGGSGGSNDHRFSNLVGSSSTDAPADGHYSITFQNCYWATGCKERMPRARNAE
LHILNCYYNVQTTSSRAIGLGGGINNSTCYIQNTHFANVSSVYTSYVSTDGGTVGLSFTG
CLGTSLTNVGTTFSPPSYTTSAFPVADVATYVPDPTCGAGATLNVSASGVITANPCANLG
MNQEVLDEEIKLYPTLIENVLNIQFPSSINGKVDIGVYDMFGKQVYASSKNIEANENLEL
NLFGLAKGVYVCKIQINGKSKNLKFIKK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaattattttaggttttattcttctaactgtgacaggtttaacaggtcaaaat
atcaatatgtcggcacctgaaggatttggagcagctgcaactggtggtggaaatggaacc
ccagttacagtaacaacctataccgcttttaaaaatgcgcttcaatcaacaactgcagct
aatagggtaattttagtttcgggtaccatagactgtatttatacaagtgtgaccttaaac
aataaaacaataattggattgccaggagcaagattaagaaatactcaaattactgttgga
aattccacaacttctgctaacaattcaggaattttaaatatcaagccaggttccaataat
gtaattatcagaaatttaatttttgaaggtccaggagcttatgatgttgatggtagggat
aatttaaccaatgaaggaacaaatatttgggtagatcattgtgagtttcaagatggaata
gatggtaattttgataacaaaggtttaggagataatgtaactatttcttggtgtaaattt
acctatttgaaacctgcagttccaggtggttcaggaggttcaaatgatcaccgtttttca
aatcttgtcggttcttcttcaacggatgcgcctgcagatggacattatagtattacattt
caaaattgctattgggcaacaggatgtaaagaaagaatgccaagagctagaaatgctgaa
cttcacattttaaattgttattacaacgttcaaactacaagttctagagctattggactg
ggaggaggaattaataacagtacttgttatattcagaatactcattttgccaatgtatca
agtgtttatactagttatgtttctaccgatggaggaaccgttggactttcttttacaggt
tgtttgggaacttcattgactaatgttgggactactttttcaccaccaagttatacaact
tcggcatttccagttgcagatgtagctacttatgttccagatccaacttgtggtgctggt
gctaccttaaatgtttctgcaagtggagtaattactgctaatccatgtgcaaatttagga
atgaatcaagaagttttagatgaagaaattaaattgtatccaaccttaattgagaatgtt
ctgaatattcaattccctagttcgataaatggaaaagttgatattggagtttatgatatg
tttggaaaacaagtatatgcatcttcaaaaaatatcgaagctaatgaaaacttagaatta
aacttatttggattagcaaaaggagtttatgtgtgtaagattcaaattaatggtaagtcg
aaaaatttgaaatttatcaaaaagtaa
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