Flavobacterium capsici: RN605_02225
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Entry
RN605_02225 CDS
T10574
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fcj Flavobacterium capsici
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fcj03009
]
RN605_02225 (rlmD)
Enzymes [BR:
fcj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RN605_02225 (rlmD)
Ribosome biogenesis [BR:
fcj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RN605_02225 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Methyltransf_11
PrmA
N6_N4_Mtase
PCMT
FtsJ
UPF0020
Methyltransf_12
N6-adenineMlase
Motif
Other DBs
NCBI-ProteinID:
WNM22187
UniProt:
A0AA96F3Q6
LinkDB
All DBs
Position
complement(489475..490893)
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AA seq
472 aa
AA seq
DB search
MRRKETKKVIFENIKVLDAGAKGVSVAKAPEGQVIFIPNVVPGDVVDVQTFKKRKAYYEG
KAIKFHELSEHRVEPVCQHFGVCGGCKWQNMNYSQQLFYKNQEVYNNLKRIGKIPLPDFE
PILGSEKQFFYRNKMEFGFSDSRWLTNEEIASGESFQKNALGFHIPKMWDKILDIEKCHL
QEDPSNEIRNAIRDFATEKGMTFFNARNHAGLLRTLMMRTASTGEIMVLIQFFEDDKANR
ELLLDFVYEKFPQITSLQYVINSKANDTLYDQNIILYKGRDYILEEMEGLHFSINAKSFY
QTNSDQAYELYKISREFAGLTGNELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIADA
KENAKRNNITNCEFYVGDMKNVFNEEFIKTHGHPDVIITDPPRDGMHKDVVEQIMKIAPE
KVVYVSCNSATQARDLALMDEKYSVTRVRPVDMFPQTHHVENVVLLEKRIAN
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaaaagaaaccaagaaagtaatctttgaaaatataaaagttcttgatgctggc
gccaaaggtgtttcggtagccaaagctcccgaaggtcaagtaatctttatccctaatgta
gttccgggtgatgtggtagatgtgcaaacgtttaagaaacgaaaagcctactacgaaggc
aaagccataaagtttcatgaattatcagagcatcgtgttgaacccgtttgtcagcacttt
ggtgtttgtggcggttgcaaatggcaaaacatgaactacagccagcaattgttctacaaa
aatcaggaagtgtataacaacctgaaacgtattggcaaaataccactacccgactttgaa
ccaatattaggttctgaaaaacagtttttctaccgcaacaaaatggagtttggtttttca
gattcgcgttggttaaccaatgaagaaattgcttcgggcgagtcgtttcaaaagaatgct
ttaggttttcacattccaaaaatgtgggataagattctagacatcgaaaaatgtcactta
caagaagatccgtctaacgaaatcagaaacgccattagagattttgctaccgaaaaaggc
atgacgttttttaatgctcgaaatcacgcaggtttgttgagaacactgatgatgcgaacc
gcttctactggtgaaattatggtgttgattcaattttttgaagacgataaagccaaccgc
gagttgcttttggattttgtttacgagaagtttccacaaatcacttcgctgcaatatgtc
atcaacagtaaagccaacgatacgctttatgaccaaaacatcattttgtataaaggtcgc
gattatattttggaagaaatggaaggtttgcattttagtattaatgctaaatcgttctat
caaaccaattcagaccaagcgtatgaattgtataaaatatcccgagaatttgctggttta
acaggcaacgagctggtatatgatttatataccggaactggaaccatagcacagtttgta
tcaaagcaagcaaagaaagttattggtgtagaagccgttcctgaagccattgccgatgcc
aaagaaaatgcgaaacgcaacaatattaccaactgcgaattttatgttggtgatatgaaa
aatgtgtttaacgaagagttcatcaaaacgcatggtcatccagatgtgattattaccgat
ccaccacgagatggaatgcacaaagacgtagtggaacaaattatgaaaattgctccagag
aaagtggtttatgtaagttgtaactcggcaacacaagctagagatttggccttgatggat
gaaaaatatagtgttacacgtgttcgtccggtagatatgtttccgcaaacgcatcatgta
gaaaatgttgtacttttggaaaaaagaattgcaaattag
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