Flavobacterium capsici: RN605_03705
Help
Entry
RN605_03705 CDS
T10574
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fcj Flavobacterium capsici
Pathway
fcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN605_03705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcj03019
]
RN605_03705
Enzymes [BR:
fcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RN605_03705
Messenger RNA biogenesis [BR:
fcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RN605_03705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
HEM4
Ins_allergen_rp
CMS1
Motif
Other DBs
NCBI-ProteinID:
WNM22473
UniProt:
A0AA96F1T8
LinkDB
All DBs
Position
789677..790930
Genome browser
AA seq
417 aa
AA seq
DB search
MLFEDLSLSKSIQRAVFEEGYTSPTPIQEKAIPIVLSGKDLVGCAQTGTGKTAAFAIPII
HNLHRMIGSSKKTKVIRCLVVTPTRELAVQIGESFDTYGKYTNLRQLTIFGGVSQVPQVD
QLKKGVDILIATPGRLLDLHKQGFLDFDHLHFLVLDESDLMLDMGFINDVKKIVKLVPSN
RQTLLFSATMPLAIRELADTFLTKPEYVSVTPVSSTAEIIEQQIYFVDKENKRGLLYHLI
RNENLKDVLVFVRTKHGADNVVKALKKQGVNAEAIHGDKSQTARQRVLDSFKNKEITVLV
ATDIAARGIDIESLPFVINFDLPNIPETYVHRIGRTGRAGNNGVSISFCGRDEETYWKDI
LKLIKVNVKTIKDHPFPWKESVPNPEAKPDLRNKKKNNSGNKSRKSEGSKKNKKRWY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcattatcaaaaagtattcaaagagctgtttttgaagaagga
tatactagtccaacgccaattcaagaaaaagcaataccaatagttctatcaggaaaagat
ttagtaggttgtgctcaaacaggtacaggaaaaactgctgcttttgcaattcctatcatt
cataatttacatagaatgattggttcatcaaaaaagaccaaagtaattcgctgtttagta
gttactcctaccagagaattagctgttcaaattggtgaaagttttgacacttatggaaaa
tataccaacctaagacaattaaccatttttggcggtgtttcgcaagtgccacaagttgat
cagctaaaaaaaggagttgatatattaattgctacaccaggtagattattagatttacac
aagcaaggctttttagattttgatcatttgcactttttggttcttgatgaatccgattta
atgcttgatatgggattcataaatgatgtaaagaaaattgtaaaattagttccatcaaat
agacaaactttattgttttcggccacaatgccattagctattagagaattagcagacaca
tttttaacaaaacccgaatatgtatctgtaacaccagtttcatctaccgcagaaattata
gagcagcaaatttattttgttgataaagaaaacaaacgcggacttttatatcacttaatt
cgcaatgaaaatttaaaagatgttttagtttttgtccgcaccaaacatggtgcagataat
gtggtaaaagcgttaaaaaagcaaggagtaaatgccgaagcaattcacggtgataaatcg
caaactgcaagacaacgtgttctagacagttttaaaaacaaagaaataaccgttttagtt
gcaactgatattgctgcgcgtggaattgatattgaaagtttaccatttgtaattaatttt
gatttgcctaatattcctgaaacttatgttcacagaattggaagaactggtcgtgctgga
aacaatggtgtttcaatatcgttttgtggacgtgatgaagaaacctattggaaagacatt
ttaaaattgattaaagtaaatgtaaaaactataaaagaccatccttttccttggaaagaa
agtgttccaaatcctgaggctaaacctgatttaagaaacaaaaagaagaataactcaggt
aataaatctagaaaatctgaaggctctaaaaaaaataaaaagcgatggtattaa
DBGET
integrated database retrieval system
