Flavobacterium capsici: RN605_05360
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Entry
RN605_05360 CDS
T10574
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
fcj Flavobacterium capsici
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcj03032
]
RN605_05360 (gyrB)
03400 DNA repair and recombination proteins [BR:
fcj03400
]
RN605_05360 (gyrB)
Enzymes [BR:
fcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RN605_05360 (gyrB)
DNA replication proteins [BR:
fcj03032
]
Prokaryotic type
DNA Topoisomerases
RN605_05360 (gyrB)
DNA repair and recombination proteins [BR:
fcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RN605_05360 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WNM22789
UniProt:
A0AA96F3A7
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All DBs
Position
complement(1158895..1160835)
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AA seq
646 aa
AA seq
DB search
MSDEIKKNNYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC
DTISVTINEDNSITVEDNGRGIPVDMHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLH
GVGVSCVNALSDHLRATVFREGVIWEQEYERGKAMYPVKQIGTTDKRGTTVTFKPDASIF
TQTLVYSYDTLAGRMRELSFLNKGITINFIDRREVKEDGSFVGEVFHSKEGLKEFVRFLD
GNRVPIISHVISMENEKGEIPVEVALIYNDSYAENIFSYVNNINTHEGGTHLQGFRMGLT
RTLKKYADASGLLEKLKFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVS
QAVAEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDC
SEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNI
FTALGVTIGTEEDSKALNLEKLRYHKVIIMCDADVDGSHISTLILTFFFRFMKELIENGH
VYIAAPPLYLVKKGNKKEYAWNDVQRDQANERMGGSAAIQRYKGLGEMNAEQLWETTMDP
NFRTLRQVTIDSLAEADRIFSMLMGDEVPPRREFIEKNAVYANIDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgagattaaaaagaacaattattcagccgatagtattcaggcattagaagga
atggagcatgttagaatgcgtccatccatgtatattggtgatactggagttagaggttta
catcacttagtttatgaagtagttgataactctattgatgaagctttagctggtcattgt
gatacaattagtgtaacaataaatgaagacaattccattacagttgaagataatggtcgt
ggtattccggtagatatgcacaaaaaagaaggcgtatctgctttggaggttgtaatgacg
aaaattggagctggaggaaaatttgataaagattcgtataaagtttccggaggtttgcat
ggagtaggtgtttcttgtgtgaatgcactttcagaccatttacgtgctacagttttccgt
gaaggtgtaatttgggaacaagagtacgaacgtggaaaagctatgtatccagtaaagcaa
attggaactacagacaaaagaggaacaacggttacttttaagcctgatgcctctattttt
acacagactttggtgtattcttatgatacattagctggacgtatgcgtgaattatctttt
ttgaataaaggtatcacgattaatttcatcgatagaagagaagttaaagaagacggaagc
tttgtgggtgaagtgtttcattcaaaagaaggattaaaagaatttgttcgttttcttgac
ggaaatcgtgtgccaatcatttcgcatgtgatttcaatggagaatgaaaagggtgaaatt
ccggttgaagtagctttgatttataacgattcctatgctgaaaatattttctcatatgta
aacaatattaacactcatgaaggaggaacacatttacaaggattccgtatggggttaact
cgtacattaaaaaaatatgctgacgcttcaggattattagaaaaattaaagtttgaaata
tcaggtgatgatttccgtgaaggtttgactgctattatttctgtaaaagtacaggaacca
caatttgaaggacaaactaaaaccaaacttggtaatagagaagtagtttctccagtttca
caagccgttgcagaaatgttagaaaattatttggaagaaaatccaaatgatgctaaaatc
attgttcagaaagtaattttagcagcacaagcacgtcatgcagcgaaaaaagctcgtgaa
atggtgcagcgtaaaactgttcttggcggcggtggattaccaggaaaattatctgattgt
tcagaacaagatccagcaaaatgtgaagtgtatcttgtcgagggagattcggctggtggt
actgcaaaacaaggtcgtgatcgtaattttcaagctattttaccattacgtggaaaaatt
ttgaatgttgagaaagcaatgcagcataaggtttttgaaaatgaggaaatcagaaacata
tttacagctttaggcgtaactatcggtacagaagaagatagcaaagcattgaatttagaa
aaactgcgttatcataaagtaattattatgtgtgatgctgacgttgatggtagtcacatt
tctaccttaatattaacattcttcttccgattcatgaaagagttgattgaaaacggacat
gtttatatagctgcgccaccattatatttagtgaaaaaaggtaataaaaaagaatatgca
tggaatgatgttcaacgtgatcaagctaatgaaagaatgggtggaagtgctgctattcag
cgttataaaggtcttggagaaatgaatgctgagcaactttgggaaaccacaatggatcct
aacttcagaacattacgccaagttaccattgatagtttagcagaagcagatagaatcttc
tcaatgttaatgggtgatgaagttccgcctcgtagagaatttattgagaaaaatgcggtt
tatgcaaatattgacgcataa
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