Flavobacterium capsici: RN605_06260
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Entry
RN605_06260 CDS
T10574
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fcj Flavobacterium capsici
Pathway
fcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN605_06260 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcj03021
]
RN605_06260 (rho)
03019 Messenger RNA biogenesis [BR:
fcj03019
]
RN605_06260 (rho)
Transcription machinery [BR:
fcj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RN605_06260 (rho)
Messenger RNA biogenesis [BR:
fcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RN605_06260 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
Rho_N
AAA_25
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
WNM22959
UniProt:
A0AA96F2G4
LinkDB
All DBs
Position
complement(1357534..1359180)
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AA seq
548 aa
AA seq
DB search
MFDISALKEMKLAELQEIAKLAKTIKITGVKKDKLIEDILEHQAKTTESEEKPKPNAKPK
LEKPKRNRISAEEIVKKEEKQGDLFVNESESEKVVEEKTEAKPKFKKPVFEKKAPANTET
TTTEEKLSEETESENSKQANNSREHKHKNQNGNNHNANNNNPNYKGKKQNFRDSDYEFDG
IIESEGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEG
EKFFPLVKVLKINGHDPQVVRDRVSFEHLTPIFPKEKFNLAGRQSSISTRIIDLFSPIGK
GQRGMIVAQPKTGKTMLLKDIANSIAANHPEVYLLVLLIDERPEEVTDMQRNVRGEVIAS
TFDEPADRHVKVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVD
ANALQKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIA
NKRIFPAIDLTSSSTRRDDLLLDEKTIQRMWIMRKYLADMNPVEAMDFINDRFKKTLNNE
EFLISMND
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttctgccttaaaagaaatgaagcttgctgagcttcaagaaattgccaag
ttggcaaaaactataaaaattactggtgttaaaaaagataaactcatcgaggatatttta
gaacatcaagcaaaaactacggaatctgaagaaaaaccgaaacctaacgctaaaccaaaa
ttagaaaagcctaaacgcaatagaatttctgctgaagaaattgttaaaaaagaagaaaag
caaggtgatttatttgtaaacgaatcagaatctgaaaaagtagttgaagagaaaacggaa
gctaaaccaaaatttaagaaacccgtttttgaaaaaaaagctcctgcaaatactgaaaca
acaactactgaagaaaaattatcagaggaaactgaatctgaaaactcaaaacaagctaac
aattctcgtgagcataagcataaaaaccaaaacggtaataatcacaatgctaacaataat
aatccaaactataaaggaaagaaacaaaatttccgtgattcagattatgaatttgacgga
attatagaaagcgaaggtgttcttgaaatgatgcctgatggttatggttttttacgttca
tctgactataattatttggcttcaccagatgatatttacttatcaacttcacaaattcgt
ttgtttggtttaaaaacaggtgataccgtaaaaggggttgttcgtccaccaaaagaaggc
gaaaaattctttcctctagtaaaagttttaaaaataaatggtcatgatccgcaagtagtt
cgtgatagagtttcatttgaacatttaacaccgatatttccaaaagaaaaattcaattta
gccggaagacaatcaagtatttcaactcgaattatagatttgttttcaccaattggaaaa
ggacaacgcggtatgattgtggcgcaaccaaaaacaggtaaaaccatgcttttgaaagat
attgccaatagtattgctgccaatcatccagaagtatatttgttagttttgcttatagat
gaacgtccagaagaagttaccgatatgcagcgtaatgttcgcggtgaagttattgcttca
acgtttgatgaaccagcagacagacacgtaaaagtggcaaatatagttttagaaaaagca
aaacgtttggtagaatgtggtcatgatgtggtgattcttttagattcaattacacgttta
gctagagcttacaataccgttcaacctgcatcaggaaaagtactttcaggtggagttgat
gcaaacgcattgcaaaaacctaaacgtttcttcggtgctgcacgtaatatagaaaatggt
ggttcgttgagtattattgcaactgctttaactgaaactggttcaaaaatggatgaggtt
atttttgaagaatttaaaggaaccggtaatatggaattacaattggatagaaaaattgcc
aacaaacgtattttcccagctattgatttaacttcttcaagtactcgtcgtgatgatttg
ttattagacgaaaaaaccattcaacgtatgtggattatgcgaaaatatctagccgatatg
aacccagtagaagcaatggattttataaacgatagattcaaaaagacattaaataacgaa
gagtttttaatttcaatgaatgattaa
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