Flavobacterium capsici: RN605_06980
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Entry
RN605_06980 CDS
T10574
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fcj Flavobacterium capsici
Pathway
fcj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RN605_06980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcj03021
]
RN605_06980 (rpoC)
03400 DNA repair and recombination proteins [BR:
fcj03400
]
RN605_06980 (rpoC)
Enzymes [BR:
fcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RN605_06980 (rpoC)
Transcription machinery [BR:
fcj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RN605_06980 (rpoC)
DNA repair and recombination proteins [BR:
fcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RN605_06980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WNM23100
UniProt:
A0AA96J2F3
LinkDB
All DBs
Position
complement(1515925..1520226)
Genome browser
AA seq
1433 aa
AA seq
DB search
MMNRNKDKNTIKRFDRISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFG
PVKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNK
IGYILGLPSKKLDMIIYYERYVVIQAGIAKTPEGESLERLDFLTEEEYLNILDTLPMENQ
YLDDNDPNKFIAKMGAECIMDLLARTDLDALSYELRHSANNETSKQRKTEALKRLQVVES
FREANLNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRL
MEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNL
LGKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIID
KKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFD
GDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPE
HKILGEGLTFYSAEEVNIALNEGKLELNARVKIRAKDFNENGELVYKLIQTTAGRVLFNE
VVPEAAGYINEVLTKKSLRDIIGKILSVTDVPTTAAFLDNMKDMGYKFAFKGGLSFSLGD
IIIPQRKDELIADAREQVDGITMNYNMGLITNNERYNQVIDVWTSTNAMLTELAMKNIRE
DQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLS
ILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGIEVSALKKN
EEIVETLGERILGRVALQDVINPLNNEVLVHAGVQITEAIVKAIEESPLEKVDVRSPLTC
EAKKGICAKCYGRNLATGKMTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNISEES
SIVTRFAGRLEIEDLKTVKGEDSEGNSVDIVISRSTELKLVDTKTGIVLNTHNIPYGSSI
FVKDGDIVEKGTTICKWDPYNGVIISEFTGKIGYEDLEQGQSYIVEIDEQTGFQEKVISE
GRNKKLIPTLHIYGKDGELMRTYNLPVGAHLMVEDGEKIKAGKILVKIPRRSSKAGDITG
GLPRITELLEARNPSNPAVVTEIDGVVSFGKIKRGNREIIIESKFGEVKKYLVKLSNQIL
VQENDFIKAGMPLSDGAITPEDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVI
RQMMRKVRVEDPGDTLFLEEQLIHTSDFILENDKLYGMKVVEDAGDSEVLKAGQIVSPRE
LRDENSLLKRNDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNEAA
VAGKVDTLEGLKENVIVGHRIPAGTGMREYDHTIVGSKEDFNEIMSRKEEYIY
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatagaaataaagataagaatactatcaaaagatttgacagaatttcgataggt
ttagcttctccagaatcaatcttggctgaatcaagaggtgaagttttaaagccagaaaca
atcaattatagaactcataagccagaacgtgatggtcttttctgcgaaagaatatttggt
ccagttaaagattttgaatgtgcttgtggaaaatacaaaagaattcgctacaaaggtatc
gtttgtgaccgttgtggtgttgaagtaaccgaaaagaaagtgcgtagagatagagttgga
cacatcaatcttgttgttccaattgctcacatttggtacttccgttcgttacctaacaaa
attggttatatcttaggattaccttctaagaaattagatatgattatttactacgaaaga
tatgtagtaattcaagcaggtattgcaaaaacacctgaaggtgaatcattagaaagatta
gactttttgactgaagaagaatatctaaatattttagatacacttccaatggaaaatcaa
tatttagatgataatgatccaaataaattcattgccaaaatgggtgccgaatgtattatg
gatttattagcacgtacagatttagatgcattgtcatatgaattacgtcacagtgctaac
aacgaaacatctaaacaaagaaaaacagaagcattaaaaagattacaagttgttgaatct
ttccgtgaagcaaacttaaacagagaaaaccgtccagaatggatgattttaaaagtaatt
ccagttatcccaccagaattacgtccgttagttccactagatggaggtcgttttgctacg
tctgacttaaatgatttataccgtcgtgtaatcatccgtaacaaccgtttgaaaagattg
atggaaatcaaagctccggaagtaatcttgagaaacgaaaaacgtatgttacaggaatca
gtagattcattgttcgataacacgcgtaaagcttctgcggttaaaacagaatcaaacaga
ccattgaaatcactttctgattccttaaaaggtaaacaaggtcgtttccgtcaaaactta
ttaggaaaacgcgtggattattctgctcgttcagtaattgttgttggaccagaaatgaaa
ttgtttgaatgtggtttgccaaaggatatggctgctgaattgtacaaaccatttgttatt
cgtaagttaatcgaaagaggaatagttaaaacagttaagtcggctaagaaaataattgat
aaaaaagagccagtagtttgggatattcttgaaaatgtaatcaaaggacatccagtatta
ctgaaccgtgctcctactttacacagacttggaattcaagcattccagcctaagttgatt
gaaggaaaagcaattcaattgcacccattagtatgtactgcattcaacgcggattttgat
ggtgaccagatggcagttcacttaccacttggaccagaagctattcttgaagctcaattg
ttaatgttggcttctcataatatcttgaatccagcaaatggtgcgccaattacagttcct
tctcaggacatggttcttggtttatattatatgacaaaagagagattgtcaactcctgag
cataaaattttaggtgaaggattaactttctattctgctgaagaagtaaatattgcttta
aatgaaggtaaattagaattgaatgctcgtgttaaaattagagcaaaagattttaatgaa
aatggtgaactagtttataaattaatccaaacaactgcaggtagagtattgtttaatgaa
gttgtacctgaagctgctggatatattaatgaggttttaactaaaaaatcacttcgtgat
attattggaaaaattttgtcggtaactgatgtgcccacaactgcagctttccttgataac
atgaaagatatgggatataaatttgccttcaaaggtggattatcattctcattaggtgat
atcattattcctcaaagaaaagatgaattgattgctgatgcacgtgagcaagttgatgga
attaccatgaactataacatgggattaattaccaacaatgagcgttacaatcaggttatt
gatgtttggacatctaccaatgcaatgctgactgaattagcaatgaaaaatattagagaa
gatcaacaaggatttaactctgtatacatgatgcttgattctggagctcgtggatcaaaa
gagcaaattcgtcagttaaccggtatgcgtggtttgatggctaaacctaaaaaatcaact
gctggtggtggtgaaattattgaaaacccaattctttctaactttaaagaaggtctttcg
attttagaatactttatttcaactcacggtgcacgtaaaggacttgcagatactgcgtta
aaaacagctgatgctggatacttaacaagaagattacatgatgtttctcaagatgttatt
gtaaactcagttgattgtggtacattaagaggaattgaagtttctgcattaaagaaaaac
gaagaaatcgttgaaactttaggagaaagaattcttggacgtgtagcattacaagatgtt
attaatccattaaataatgaagttttagttcatgcaggtgtacaaattacagaagctatt
gttaaggctatcgaagaatcaccacttgaaaaagttgatgttcgttcacctttaacatgt
gaagctaaaaaaggtatttgtgctaaatgttacggtagaaacttagcaactggaaaaatg
acacaaaaaggtgaagcagttggtgttattgctgctcaatctattggtgaaccaggaaca
cagttaacgcttcgtacattccacgttggaggtacagcaggtaatatctctgaagaatca
agtattgtaactcgttttgcaggtagacttgaaattgaagatttaaaaactgtaaaaggt
gaagatagtgaaggaaattctgttgatattgtaatttcacgttcaacagaattgaaatta
gttgatacaaaaactggaatcgttctaaacactcataatattccttatggttctagcatc
ttcgttaaagatggtgatattgttgaaaaaggaacaactatttgtaaatgggatccatat
aatggtgtaattatttctgaatttacaggaaaaattggttacgaagatttagaacaaggt
caatcttatattgttgaaattgatgagcaaactggtttccaagaaaaagtaatttctgaa
ggtagaaataaaaaattaataccaactttacatatttatggtaaagatggagaattaatg
agaacttacaatttaccagttggagcacacttaatggttgaagatggagagaaaattaaa
gcaggaaaaattcttgtgaaaattcctcgtcgttcttcaaaagcaggtgatattactgga
ggtttaccaagaattacagagttgttagaagctcgtaatccttcaaatccagctgttgtt
actgaaattgatggtgttgtttcttttggaaaaattaagagaggaaatcgtgagattata
attgaatctaaatttggagaagttaagaaatacttagtaaaattatctaaccaaatttta
gttcaggaaaacgactttataaaagctggtatgccattgtctgatggtgcgataactcca
gaagatattttaagaattcaaggaccaagtgctgttcaacaatacttagtaaatgaaatt
caagaagtatatcgtttacaaggtgtaaaaatcaacgataaacactttgaagtcgttatt
cgtcagatgatgcgtaaagtaagagttgaagatccaggagatactttattcttagaagag
caactaatccacacaagtgatttcattttagaaaatgataaactttacggaatgaaagtt
gttgaagatgctggtgattctgaagtcttaaaagcaggacaaattgtttctccacgtgag
ttgagagatgaaaattcacttttaaaacgtaacgataaaaacttggttgttgcacgtgat
gttattacagctacagcaactccagttcttcaaggtattacaagagcttctcttcaaact
aagtcatttatttctgcggcatcgttccaggaaactactaaagtattgaatgaagctgcg
gttgctggaaaagtagatacgttagaaggattgaaagaaaatgtaattgtaggtcataga
attcctgctggaacaggtatgagagaatacgaccatacaattgtaggttctaaagaagac
tttaacgaaattatgtctagaaaagaagaatatatatactaa
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