Flavobacterium capsici: RN605_09030
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Entry
RN605_09030 CDS
T10574
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fcj Flavobacterium capsici
Pathway
fcj03410
Base excision repair
fcj03430
Mismatch repair
fcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RN605_09030 (recJ)
03430 Mismatch repair
RN605_09030 (recJ)
03440 Homologous recombination
RN605_09030 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcj03400
]
RN605_09030 (recJ)
DNA repair and recombination proteins [BR:
fcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RN605_09030 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RN605_09030 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RN605_09030 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DSPc
Motif
Other DBs
NCBI-ProteinID:
WNM20827
UniProt:
A0AA96J3K0
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Position
complement(1946477..1948171)
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AA seq
564 aa
AA seq
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MRWNVKPKPDAERVNHLMEVLKVDEIIATLLVQRGIETYEQARAFFRPSLDDLHNPYLMK
DMDKAVSRIEQAIENEENILVFGDYDVDGTTAVSLVSGYLKSFYPNVATYIPDRYDEGYG
ISYKGIDFAEDNGFSLIIALDCGIKSIEHIDYATAKNIDFIICDHHRPGDVLPNAVAVLD
PKREDCTYPYDELCGCGVGFKLVQALAQHRNQTIDDLMVYLDLVATAIAADIVPMTGENR
VLAKFGLDVINSNPRPGIKALIQNVKKKVLTITDVVFIIAPRINAAGRIKHGNEAVALLT
EYDLDQAAQFAAEIEQHNSDRKDLDKQITVEALAQITQNNETNRFTTVVYQEDWHKGVIG
IVASRLIETHYRPTIVFTKSGDKLAASARSVKDFDIYNALEAVSEHLEQFGGHMYAAGMT
LKEENYPAFKEAFEKVVEQTIHPDLLIPEVSIDAEINFTDINERLMRLLNQFEPFGPQNM
TPVFMTKNVIDTGYGKTIGQDDEHLKLFVKQNNSEGIGVIGFGFGNQLPITKNHQPIAIC
YCIDENEFNGTVSLQLRLKDIKPN
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggaacgtcaaaccaaaacctgatgccgaaagagtaaaccacttaatggaggtg
ttaaaagtagatgaaatcattgcaacgctgttggtgcaacgaggtattgagacgtatgag
caggcacgtgcgtttttcaggccaagtttagacgatttgcacaatccgtatttgatgaaa
gatatggacaaagcggtttcgcgcattgaacaggcgattgaaaacgaggaaaacatattg
gtctttggggattatgatgttgatggaacaacggcggtttcgctggtgtcgggttatttg
aaaagtttttatcccaatgtggcaacttatattcccgaccgatatgatgaagggtatggg
atatcctataaaggaattgattttgcggaagacaacggattttcgttaatcattgcactc
gattgtggtattaaatcgattgagcatatcgattatgctacagcaaaaaacattgatttt
attatttgcgaccatcaccgaccgggcgatgttttgccgaatgcggtggcggtattggac
ccaaaacgggaagattgcacctatccgtatgatgagctgtgtggttgtggtgttgggttt
aagttggttcaggcattggcgcagcatcgaaatcaaacgatagacgatttgatggtttat
ctggacttggtggcaacggcgattgcggcagatattgttccgatgacgggagaaaatcgg
gttttggcaaagtttggattggacgttatcaacagcaatccgcgaccgggaattaaagcg
ttaatccaaaatgtaaaaaagaaagtactgacgataacggatgttgtttttattattgcg
ccgagaattaatgcggcgggaaggataaaacacggtaacgaagccgtggcgctacttacc
gaatatgatttagaccaagcagcacagtttgcggcagagatagaacaacataacagcgac
cgaaaggatttggacaaacaaatcacggtggaagcgctggcacaaataacacaaaacaac
gaaacgaaccgctttactactgtggtgtatcaggaagactggcacaaaggcgtgattggt
attgtggcttcgcgattgattgaaacccattatcgaccaacgatagtgtttactaaaagc
ggtgacaagttggcggcttcggcacggtcggtgaaggattttgatatttataatgctttg
gaagcggtttcggagcatttggagcaatttggtggccatatgtatgcggcaggaatgact
ttgaaagaggaaaattatcctgccttcaaagaagcatttgaaaaagtagtggaacaaacc
attcatcctgatttattgattccggaggtttcgatagatgctgaaattaattttacagat
attaatgaacgattgatgcggttgttaaaccaatttgagccttttggaccgcaaaacatg
acgccagtttttatgaccaagaatgtgattgatactggttatgggaaaacgattggtcag
gatgatgagcatttaaagctttttgtgaagcaaaacaactcggaaggaattggggttatt
ggttttggatttggaaatcaattgcctatcaccaaaaaccatcaaccgatagcaatttgt
tattgtattgatgaaaatgaatttaatggaaccgtatctttgcaactgcgattgaaagat
attaagcccaattag
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