Flavobacterium capsici: RN605_13430
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Entry
RN605_13430 CDS
T10574
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fcj Flavobacterium capsici
Pathway
fcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN605_13430 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcj03019
]
RN605_13430 (recQ)
03400 DNA repair and recombination proteins [BR:
fcj03400
]
RN605_13430 (recQ)
Enzymes [BR:
fcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RN605_13430 (recQ)
Messenger RNA biogenesis [BR:
fcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RN605_13430 (recQ)
DNA repair and recombination proteins [BR:
fcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RN605_13430 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
WNM21670
UniProt:
A0AA96F308
LinkDB
All DBs
Position
2977689..2979884
Genome browser
AA seq
731 aa
AA seq
DB search
MNSNEIDIHKELKKYFGFSQFKGLQENVIKSIVGKNNTFVIMPTGGGKSLCYQLPALIQD
GTAIVVSPLIALMKNQVDAIRSLSSENGIAHVLNSSLTKTEINQVKKDITSGITKLLYVA
PESLTKEEYVQFLKSVPISFVAIDEAHCISEWGHDFRPEYRNLRTIIKHLGDVPVIGLTA
TATPKVQEDILKNLDMSDAKTFKASFNRPNLFYEVRTKTKNIESDIIRFIKQNKGKSGII
YCLSRKKVEDIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFDSETGEGADMDDNVRNPKVKVEAMDNVKK
LLEVVRDTKHLYKSKEIVFTLIGRVNATIKAHRTDAQSFFGCGSDQEERYWMALIRQVLV
EGYLKKDIETYGILKVSPKGLDFIKNPVSFMMSEDHEYNEAEDDAIVTAAKSSGTADELL
MGMLRDLRKKVAKKLGVPPFVVFQDPSLEDMALKYPISIEELTNIHGVGEGKAKKYGKEF
VELIARYVDDNDIVRPDDLVVKSTGANSANKLYIIQNIDRKLSLEDIAKAKGLTMEALLK
EMEQIVYSGTKLNINYHINELLDEDQQEEIHDYFMESETDKIEDALKEFDGDYDIEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaattctaacgaaattgacatacacaaagaattaaaaaagtattttggtttctctcaa
tttaaaggattacaagaaaatgttataaaaagtattgttggtaagaacaatacttttgtt
attatgcctactggtggaggaaaatcactttgttatcaattacctgcattaatacaagac
ggaacagcaattgttgtttcgccactaattgccttgatgaaaaatcaagttgacgcaatt
agaagtttgtcttcagaaaacggaattgcacacgttttaaattcctcgttaaccaagaca
gaaatcaatcaagtaaaaaaagacattacttctggtattactaaattactgtatgtagct
ccagaatcattaaccaaagaagaatacgttcagtttttaaaatcagtgccaatttcattt
gtagctattgatgaagcacattgtatctcagaatggggacacgatttcaggcctgaatac
agaaacttaagaaccatcatcaaacatcttggcgatgttcctgttattggattaaccgct
acggctactccaaaagttcaggaagatatccttaaaaatttggacatgagtgatgcaaaa
acattcaaagcatcatttaaccgtccgaatttgttttacgaagtacgaacaaaaaccaaa
aatatcgaatcggatatcatccgttttatcaagcaaaacaaaggtaaatcgggaattatc
tattgcctaagcagaaagaaagtagaagatattgccgaagtattacaggtaaatggaatt
tcagcagtgccttatcacgcaggtttggatgctaaaacccgcgccaaacatcaggatatg
tttttgatggaagatgtagatgtagtggtggcaaccattgctttcggtatgggaattgac
aaacccgatgtacgttttgtaattcaccacgatattccaaaatcattagaaagttattat
caggaaactggtcgtgctggtcgcgatggtggcgaaggtcattgtttggcttactattcg
tataaagatgttgaaaaattagaaaaattcatgtcgggcaaacccgttgccgagcaggaa
attggttttgctttgcttcaggaagttgtggcttatgctgaaacatcgatgtcgcgacgt
aaatttttattgcattattttggtgaagaatttgatagcgaaacaggcgaaggcgctgat
atggatgacaatgttagaaatccaaaagttaaggttgaagccatggacaatgtcaaaaaa
ctactcgaagtggttcgcgacaccaagcatctttataaatcaaaagaaattgttttcaca
ttaattggccgcgtcaatgctaccataaaagcccacagaaccgatgcacaaagttttttt
ggttgtggtagcgaccaggaagaacgctattggatggcgctcattcgtcaggttttggta
gaaggttatttaaagaaagatatagaaacctatggtattctgaaagtatcgccaaaagga
ttggattttattaaaaatccagtttctttcatgatgtcagaagaccacgagtataacgaa
gcagaagatgatgctatcgtaacagcggcaaaatcaagcggaactgccgatgaattattg
atgggcatgctgcgcgatttacgtaaaaaggtagccaagaaattaggcgttccacctttt
gtggtctttcaagatccgtcactagaagatatggcgttgaaatatccaatttctattgag
gaactaaccaatattcatggagtaggcgaaggaaaggctaagaaatacggaaaagaattt
gtagaattgattgcccgttatgttgatgataacgacatcgttcgtccggatgatttggtg
gtcaaatctacaggtgctaactcggctaataagctgtatatcattcaaaatatcgataga
aagttatcactcgaagatatagccaaagccaaaggattgaccatggaagccttgcttaaa
gaaatggagcaaattgtatattcgggtaccaagttaaacatcaattaccatatcaatgaa
ctgctagacgaagaccagcaagaggaaatacacgattatttcatggaatcagaaaccgac
aaaatagaagatgcactcaaagaatttgatggcgattacgacatcgaagaactccgcctg
atgcgcattaaattcatcagtgaagtagcaaattaa
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