Frederiksenia canicola: A4G17_01110
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Entry
A4G17_01110 CDS
T06481
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fcl
Frederiksenia canicola
Pathway
fcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4G17_01110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcl03019
]
A4G17_01110
03009 Ribosome biogenesis [BR:
fcl03009
]
A4G17_01110
Enzymes [BR:
fcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A4G17_01110
Messenger RNA biogenesis [BR:
fcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4G17_01110
Ribosome biogenesis [BR:
fcl03009
]
Prokaryotic type
rRNA processing factors
A4G17_01110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
NPDC1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
QIM65789
UniProt:
A0AAE7C352
LinkDB
All DBs
Position
complement(234704..237670)
Genome browser
AA seq
988 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEISREYFPEGYVFQGRPNIKDIIQEGQEVIVQVGKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLTVPDDVGLIVRTAGVGKSPEELQWD
LKVLLHHWEAIKQAAQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNH
IRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI
NSSRATRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIR
EATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSIL
RLLEEEAIKDNSAQVHTIVPVEIASYLLNEKRRAISDIEKRHDVQVVVVPTESMHTPHFS
VYRLRESEVVPTLSYDLAKRYQEREENSLISQQSEDVLVTRNEPVLTVESVLQNAELNLQ
AAPTPAAPAKPSLLSRLIAKIKSWFSEEEKAPQKKGKHNKRNPRDRRQQRRERPNRNEQR
QERKNQAIEDNKALQKEAQAETKAESKKRRDVVEEVVSERQQRETAKVAERRQRRDLRKK
VRVEGNDVESKASEMQVVAETETPAKFVVQDSPMLPTEQFEMAEAQAVTSTEKFANNDSK
DDANDSKENGRQRRLPRHLRVGGNQRRRERRDEVKAVMPLAAAVASPEFASGKIWVKVCE
TPKAEEKTAFLSVDEMLQQQTQPEQKEIVKAKPNPDAKFAVPFGGVVTQATDRDLVKENH
ERKNHEEVDVVSSDTEPKPLPDAIQPFGFVVTQETNRDLVKENHARRSVKSAASVAQAEQ
STVVEEPAKTIGVYQSSYQFEGKLGTFSRVPHTKAAMSVAAAPVEQSPAFPIQEWQHSKY
YFYGKGFGGHSSAISHVYSVARVASSVE
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaatgcaactcagaaagaagagttgcgtgttgcccttgtcgatgggcagcga
ctgttcgacttggacattgaaagtccggggcacgagcagaaaaaagcgaatatctacaaa
ggaaaaatcactcgcgttgagccgagtttagaagcggcatttgtcgattacggtgcagaa
cgtcacggtttccttcctctcaaagaaatttctcgagaatacttccctgaaggttatgtg
ttccaaggtcgcccgaatatcaaagatattatccaagaagggcaagaagtcatcgtccaa
gtcggaaaagaagagcgtggcaataaaggggcagcactgacgactttcatctcccttgcg
ggcagttatttagtgttaatgccaaacaatccaagagcaggtgggatttctcgccgcatt
gaaggtgatgagcgtttggaactcaaagaagcccttgattgcttgacggtgcctgacgat
gtggggttgatcgtgcgtactgccggtgtcggcaagtcgccagaggagctgcagtgggac
ttaaaagtgttgctacaccattgggaagccattaaacaagcagcacaatctcgtcctgca
ccatttttaattcaccaagaaagtgatgtgatcgtgcgtgctattcgcgactatctccgt
cgtgatattggcgaaatcttaattgataacaaaaaagtgttcgaaaaagcgaaaaatcat
atccgcttggtgcgtcctgacttcatcaatcgtgtgcgtttatacgaaggcgaagtgccg
ttgttcagccactatcaaattgaatcgcaaattgaatccgcattccaacgtgaagtgcgt
ttaccatcaggcggttcaatcgtaattgatgttacggaagccttaactgctattgacatc
aactcgtctcgagccactcgtggtggcgatattgaagaaaccgcattgaacaccaacttg
gaagcggctgatgaaatcgcacgccaattacgtttgcgtgacttgggaggattgattgtc
atcgacttcattgacatgacgccagttcgccaccagcgtgaagtagagaaccgcattcgt
gaagccactcgccaagatcgggctcgtattcaatttggtcgtatttctcgttttggcttg
cttgaaatgagccgccagcgtttgagtccgtccttaagtgaggcctcaagccacgtttgt
ccacgttgccaaggtactggcaagattcgtgataatgaatcgattgcgttgtcgatttta
cgtttacttgaagaagaagcaattaaggacaattccgcacaagtgcataccatcgtgcca
gtagaaattgcctcgtacttattgaacgaaaaacgccgtgcgattagtgatattgaaaaa
cgtcacgacgtacaagtggttgtggtaccaacggaatcgatgcacacaccacatttcagt
gtttatcgcttgcgtgaaagtgaagtggtaccaaccttaagttatgatttagccaaacgc
tatcaagagcgtgaagaaaatagcttgatctcgcaacagagcgaagatgtgctagtcacc
cgtaatgagcctgtgctcacggtggaatcggtcttgcagaatgcggagttaaatttacaa
gcggctccaactccagcggctcctgcgaagccatcgttactaagccgtttgattgccaag
atcaaatcttggttctcagaagaagaaaaagcaccgcagaaaaaaggtaaacataataaa
cgcaatccacgtgatcgtcgtcagcaacgtcgtgagcgtccaaatcgcaatgaacagcgt
caagaacgcaaaaatcaagcgattgaagacaacaaagctttacaaaaagaagctcaagca
gaaacaaaagccgagagcaaaaaacgccgtgatgtggtcgaagaagtggtgagtgaacgc
caacagcgtgaaacggcaaaagtggcagaacgtcgccaacgtcgtgatttacgcaaaaaa
gttcgagtagaaggcaacgatgtagaatcaaaagcaagtgagatgcaagtcgttgctgaa
acagagacaccagcaaaatttgttgtgcaagattcaccgatgttgccaactgaacaattc
gagatggcagaagcacaagcggtcacttccactgaaaaatttgcaaataatgacagcaaa
gacgatgctaacgattcgaaagaaaatggtcgtcagcgtcgtttgccacgtcatttgcgt
gtgggtggaaatcaacgccgtcgcgaacgccgtgatgaagtcaaagctgtaatgccatta
gcggcagcggtcgcatcacccgagtttgcaagcggtaagatctgggtaaaagtttgcgaa
acaccgaaagcggaggagaaaaccgccttcttgtctgtggatgaaatgttgcaacaacaa
actcaacctgaacagaaagagattgtgaaagcaaaaccgaaccctgatgcgaaatttgcc
gtaccttttggtggtgtggtgacacaagctacggatcgtgatttagtcaaagaaaatcat
gaacgtaaaaatcatgaagaagtcgatgttgtttcatcagataccgagccaaaaccgtta
cctgatgcaatccaaccatttggctttgtggttacgcaagagaccaaccgtgatttagtg
aaagaaaatcacgcccgtcgtagcgttaaatctgctgccagcgtggctcaagcggaacaa
agtaccgtagtggaagagccagcaaaaaccattggcgtttatcaaagcagttatcaattt
gaaggtaaactcggcacattctctcgcgtaccacatactaaagcagctatgtcggttgcc
gctgcccctgtggagcaaagccctgcgtttccaattcaagagtggcaacactccaaatac
tatttctatggtaaaggattcggtgggcacagcagtgcgatcagccacgtttactcagta
gcccgtgttgctagcagtgttgaataa
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