Frederiksenia canicola: A4G17_04145
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Entry
A4G17_04145 CDS
T06481
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcl
Frederiksenia canicola
Pathway
fcl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4G17_04145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcl03400
]
A4G17_04145
Enzymes [BR:
fcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4G17_04145
DNA repair and recombination proteins [BR:
fcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4G17_04145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIM64680
UniProt:
A0AAE7C1S8
LinkDB
All DBs
Position
complement(844246..847698)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSFTLQFSLPKTDGNYQDHQTLGSLVGHSDTLAIAEAAKQFNGLSVVVTPDTRTALRLEK
SLPQFSNLPVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGRKQIFLLPINTLLQKL
CPPSYLANNVLLIKKGDTFSIEKLRLQLENAGYRAVDQVLEYGEYAVRGALLDLYPMGAD
QPYRLDFFDDEIDSIRTFDVENQRTLTEISEINLLPAHEFPTDSKGIEFFRGQFREQFGE
IRREPEHIYQQVSKGVLNAGIEYWQPLFFSEMASFFDYLPPKTLFITLDELQSKAEQFAN
DTAQRYENRRVDPMRPLLPPEKLWFPIDDINRWLKGYPRLSLTTEKIRKSAAKQNANVLP
LPNVAMQSNTKEPFSAFQQFRQKFNGNILFSFETEGRRETLLDLLSPLGIKPKQIHDLSE
ADQPLSLMIGNLDQGFMIEQTSGQILAIICETDLLGERIQQSRSREKRKSVNPDTLIRNL
AELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
GADENAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFAFQYDREAFQQFS
ATFPYEETDDQKLAINAVISDMCLPKAMDRLVCGDVGFGKTEVAIRATFLAVMNQKQVAI
LAPTTLLAQQHYENFKDRFANQPVNVEVLSRFKTAKEQKEILARTAEGKVDILVGTHKLL
QEDVKFRDLGLLVIDEEHRFGVRQKERMKQLRANVDILTLTATPIPRTLNMALNGMRDLS
IIASPPARRLSIKTFVRQSDDNLIREAILREILRGGQVYYLHNDVATIENCAEKLTALVP
EARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLA
QLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAQQRLEAMSTIDNLGAGFALATHDLEIRG
AGELLGSEQSGQIESIGFSLYMDLLENAVNALQEGREPTLDEITQNQVEIELRVPALLPD
DYLPDVNMRLSFYKRIASADNADALKDLKVELIDRFGLLPEPTKNLFQITQLRHIAKGLG
LKKVDASINGGYLEFKPTATPDPMKFLKLIQQDKNGYKFDGPQKFRFTKPLETAAERLQF
VSELLERIAE
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacacttcaatttagtctgccgaaaaccgacggcaattatcaagatcatcaa
accttaggctcgttagttggacattcggacaccttggcgattgccgaagccgccaaacag
ttcaatggcttgagcgtggtggtgacgcctgacactcgcacggcgttacgccttgaaaaa
agcctaccgcaatttagcaacttgcccgtgcagctttttcctgattgggaaacgttgccg
tatgataatttctcgcctcatcaagacattatttccgcacggctgtcggcgttgttccaa
ctgcaacagggtcgaaaacaaattttcttgttgcccatcaataccttactacaaaaactt
tgtccgccgagctatttggcgaacaatgtgttgctgatcaaaaaaggcgatacgttttcg
atcgaaaagttacgtttacaactggaaaatgcgggctatcgagccgttgatcaggtgtta
gaatatggtgaatacgcagtgcggggagcattactcgacctctatccgatgggggcagat
cagccttatcgcttggattttttcgatgatgaaattgattctatccgcacttttgatgtg
gaaaatcaacgcaccttaacggaaatcagcgaaatcaatctgctgccagcccacgaattt
ccgactgatagcaaaggcattgaatttttccgaggacaattccgcgaacagtttggcgaa
attcgccgtgagcctgaacatatttatcagcaagtgagcaaaggcgtcctgaatgcaggt
attgagtactggcagccgctgtttttcagcgaaatggcaagttttttcgactatctgcca
ccaaaaaccttgtttatcaccttagacgagctgcaatccaaagcggagcagttcgccaac
gatacggcacaacgctacgaaaatcgccgtgtcgatccgatgcggccgctgctgccacct
gaaaaattatggttcccgattgacgacatcaatcgctggctgaaaggctatcctcgtttg
agtttaacaacggagaaaatacggaaatccgcggcgaagcagaatgccaacgtgttgcca
ctacctaatgtggcgatgcaatccaataccaaagagccattttcggcgtttcagcagttc
cgccaaaaattcaacggtaacattctattttcctttgaaacggaaggacgacgggagacc
ttgctcgatctgctttccccccttgggatcaaaccgaagcagatccacgatctcagtgaa
gcggatcaaccgttgagtttgatgatcggcaacctcgatcaaggctttatgattgagcaa
acaagcggtcagattttggcaattatttgcgaaacggacttacttggcgagcggatccag
caaagccgcagccgagagaaacgcaaaagcgtcaatcctgatacgctgattcgcaactta
gcggagctgaaaatcgggcaggcggtggtgcatttggaaaatggtgtgggacgttatggt
ggtttaactacgctggatgcgggtggaatcaaagcggagtacttggtgttgcattacgcc
aacgatgccaaactttatgtacctgttgcctcgctacatttgattagccgttatatcggc
ggtgcggacgaaaatgccccgttgcataaactgggctcagaagcgtgggcgaaaacccgt
caaaaagcggcagagaaaattcgtgatgtggcggcagaattacttgatgtctatgcaaaa
cgagagtcgcaaaaaggttttgcatttcaatatgatagagaagccttccaacaattcagt
gccacgttcccttacgaagaaacggacgatcaaaaactggcgatcaatgccgtgatcagc
gatatgtgcttgccaaaagcaatggatcgtctcgtttgtggcgatgtgggctttggtaaa
accgaggtggcaattcgagcaacgttcttggcagtgatgaaccaaaaacaagtggcaatt
ctcgccccaacgaccttgctcgctcaacaacactacgaaaatttcaaagatcgttttgcc
aatcagcctgtcaatgtggaagtgctttcccgttttaaaaccgccaaagagcagaaagaa
attttggctcgcaccgcagaaggcaaagtcgatattttagttggtacccacaaattactg
caggaagatgtcaaattccgtgatcttggcttgctcgtgattgatgaagaacaccgtttt
ggcgttcgccaaaaagagcgaatgaaacagctgcgagccaatgtggatattttgactttg
accgctacaccaattcctcgcacgctcaatatggcgttaaatggaatgcgggatctatcg
attatcgccagcccgcctgctcgccgcctgtcgattaaaacttttgtgcgacaaagcgat
gacaaccttattcgtgaagcgattttgcgtgaaattctacgtggcgggcaggtttattat
ctgcacaacgatgtcgccacaattgaaaattgtgccgaaaaactaactgctttagtgcca
gaagctcgtattgtgatcggacacggacaaatgcgagaacgggaactcgagcgagtgatg
agcgatttctatcatcaacgtttcaatttactcgtttgctcaaccattattgaaacgggg
attgatgtgccaacagcgaacacgattatcatcgaacgtgccgacaaattcggcttggca
caactgcaccaattgcgtgggcgggttggacgctctcaccaccaagcctatgcttatatg
ctcacgccgcacccgaaaacgctcactaaagatgcacagcaacgtttggaagcgatgagt
actattgataatctcggggcgggttttgccttagcgacccacgatctcgaaattcgtggt
gcgggcgaattacttggcagcgaacaaagcgggcagatcgaaagtatcggtttttcgctc
tatatggatttgctcgaaaatgcggtcaacgccttgcaagaaggtcgtgagccaacttta
gacgaaatcactcaaaaccaagtggaaattgaattgcgagtgcctgcgttactacctgat
gattatttacctgacgtgaatatgcggctatccttctacaaacgcatcgctagcgccgat
aacgccgatgccttgaaagatctgaaagtagagctgatcgaccgctttggattgctgcct
gaaccgactaaaaacctgttccagatcacccaattacgccatatcgcaaaaggtttggga
ttgaaaaaagtcgatgcaagcattaacggcggctatctcgaatttaaaccaacagccacc
cctgacccgatgaagtttttaaagctgatccaacaggacaaaaatggatataaattcgac
ggcccgcaaaaattccgctttaccaaaccgcttgaaaccgcagccgaaagattgcagttt
gtgagtgagttgttggaaaggatcgctgagtaa
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