Frederiksenia canicola: A4G17_09945
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Entry
A4G17_09945 CDS
T06481
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
fcl
Frederiksenia canicola
Brite
KEGG Orthology (KO) [BR:
fcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcl03021
]
A4G17_09945
Transcription machinery [BR:
fcl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
A4G17_09945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
NAT10_TcmA_helicase
DUF8810
PDZ_2
Flavi_DEAD
Spc24
Motif
Other DBs
NCBI-ProteinID:
QIM65749
LinkDB
All DBs
Position
2098340..2101255
Genome browser
AA seq
971 aa
AA seq
DB search
MSFVVGQRWISESENNLGLGIVTAVDNRTVTIDFPASEEQRVYAVAVAPLTRVQFQKGDQ
VTSVDGWQFEIDDVVENQGVAIYLGKRADTQEQGVLPEMLLDHKVSFSKPQDRLFSAQID
RSDRFALRYRALQHQQAQFQSALRGLRGIRASVIPHQLHIAKEVGQRLAPRVLLADEVGL
GKTIEAGMILQQQLFSGRVDRVLVLVPESLQHQWLVEMLRRFSLNFSLFDEERAADFTKK
DENDNDVSENPFDSESLVICSIDWLAKSPARAKQVLESQWDMLIVDEAHHLEWNEQTPSV
AYQFVEQLAKQIPAILLLTATPEQLGQESHFARLALLDSDRFYDYQAFVAEQKQYQPVAD
AVATLLNDKPLSHAEQNSISELLAEEDVEPMFRIINSADCSPEQRLEVRQELISELIDRH
GTSRVLFRNTRQGVKGFPHRLFNQITLEMPKQYANALKVMGMMGGNKQEDLLYPERLFQR
MNPNAAWYEFDPRIEWLITFLKNHRDEKILVICKHSDTAIQLEQVLREKEGIRSAVFHEK
MSIVERDKAAAYFAQQEEGAQVLISSSIGSEGRNFQFARHLVLFNLPDNPDLLEQSIGRL
DRIGQKFDIQIYVPCFENSAQMVLAEWYHNGLNAFEETCPMGATLFHEFGETLARYLQNP
SQNPPLAEFIEQTHKRQQQLKLELEKGRDRLLELNSNGGEQAQQLAQQIAEQDNNPQLVN
FALKLFDVIGLEQEDLGEKSIVISPTGHMLVPDFPGISEDGSTVTFDRELALVREDVQFL
TWDHPMIRNGIDLITSGDIGKTAISLLINKNLPAGTILLEAIYVVEAQAPKGLQLTRFLP
PTPVRLLLDAKGNDLAAQVSFAGLEKQLKPVNKQMANKIAKMARAEIEKLIAAAEAKIAP
QAEALIAAAKQNADHTLSAELHRLTSLQAVNKNIRADEVAALERLKTESLEHLNQATWRL
DSLRVIISNQA
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgtagtcggtcagcgttggattagcgaatcagaaaataatttaggattaggc
attgtcaccgcggtagataatcgcaccgtcactattgatttccctgcgtccgaagagcag
cgggtgtatgccgtggcggtagctccgctcacgagagtgcagtttcaaaaaggcgatcag
gtcacgagcgtggacggctggcagtttgaaattgatgatgtagtggaaaatcaaggggtg
gcgatttatctcggtaagcgtgccgatacccaagaacaaggcgtactgccagaaatgttg
ctcgatcacaaagtcagtttcagcaaaccgcaagaccgtttgttctctgcccaaatcgac
cgtagcgaccgctttgctttgcgttatcgggcactgcaacaccagcaggctcaatttcaa
tcggcattacgtgggctgcggggtattcgggctagcgtgattccacaccagttacacatt
gccaaagaagtggggcaacgccttgctccacgagtattgctcgccgatgaagttggtttg
ggtaaaaccattgaagcgggaatgattttacaacaacagctcttttcagggcgtgtcgat
cgggttttggtgcttgtaccagaaagtttgcaacatcaatggctggtggaaatgctccgc
cgtttcagcctgaatttctcgttgtttgatgaagaacgtgctgccgatttcactaaaaaa
gacgaaaatgacaacgatgtcagcgaaaatccgtttgatagcgaaagtttagtgatctgc
tcgatagattggctcgcgaaaagccctgctcgagcgaaacaagtgcttgaaagtcaatgg
gatatgttgatcgtcgatgaagctcatcatcttgaatggaacgaacaaacaccaagtgtt
gcctatcaatttgtcgaacagttagccaagcaaattcctgccattttgctattgacggca
actcctgaacagcttgggcaagagagccattttgctcgccttgccttgttggactccgac
cgtttctatgattaccaagcctttgtcgctgagcagaaacagtatcagcccgttgccgat
gcggtggcgaccttgctcaacgacaaaccactcagccatgccgagcagaacagcattagc
gagctattagcggaagaagatgtggagccaatgttccgcatcatcaattctgccgactgt
tcgccagaacaacgccttgaagtccgtcaagagctgattagcgagttgatcgaccgtcac
ggtaccagccgtgtgctgttccgcaacactcgtcaaggagtgaaaggcttcccgcacaga
cttttcaaccaaatcacgttggaaatgccgaagcagtacgctaacgccttgaaagtaatg
ggcatgatgggcggcaacaagcaggaagatttactctaccctgaacgcctattccaacga
atgaatccaaatgcagcgtggtatgaattcgatcctcgcattgaatggctgatcaccttc
ttgaaaaatcatcgtgatgaaaaaattttggtgatttgtaaacattccgacaccgctatt
cagctcgaacaagtgctgcgggaaaaagaaggcattcgctcggcagtgttccacgaaaaa
atgtcgattgtcgaacgagacaaagccgctgcctatttcgctcaacaggaagaaggggca
caggtgctgatcagttcaagcatcggttcagaaggacgtaacttccagttcgctcgccac
ttggtgctgttcaacttgcctgataaccctgatttattggagcaaagtatcgggcggctt
gaccgcatcgggcagaaatttgatattcaaatttatgtgccttgctttgaaaattccgcc
caaatggtgcttgccgagtggtatcacaacggcttgaatgcctttgaagaaacttgccca
atgggggcgaccttgttccatgaatttggtgaaacattggcacgctatttgcaaaatcca
agccaaaacccaccgcttgcagagttcatcgagcaaactcacaaacgccaacagcaactc
aaattagagttggaaaaagggcgagatcgcttgctggaactcaattctaacggcggcgaa
caggctcaacagttggcacagcaaattgccgagcaggacaacaatccgcagttggtcaat
ttcgccctgaaactgtttgatgtaatcggcttggagcaggaggatctcggcgagaaaagc
attgtgatcagcccaacggggcatatgttagtgcctgatttcccaggaatttcggaagat
ggcagcacggtgacgtttgatcgtgaattggcactagtgcgtgaagatgtacagttttta
acctgggatcacccgatgatccgcaacggtatcgacctgatcacttcgggcgacattggc
aaaactgccatttcactgctaattaacaaaaacttacctgctggcacgattctgcttgaa
gcgatttatgtggtcgaagcccaagcgccgaaaggcttacaactcacccgtttcctgccg
ccaacgcccgtacgtttactgcttgatgccaaaggcaacgatcttgctgctcaagtatcg
ttcgcaggtttggaaaaacagctcaaaccggtgaacaaacagatggcgaacaaaatcgcc
aaaatggcaagagcggaaattgagaaattgattgctgccgccgaagcgaaaatcgcaccg
caagcggaagccttaattgctgcggcgaaacagaatgccgatcacacgttatcggcagag
ttgcaccgcttgacttcgctccaagcggtcaataaaaatatccgagccgatgaagtcgct
gcgttagaacgattgaaaacggaatctcttgaacatctcaaccaagccacttggcgatta
gatagcttgcgggtgattatcagcaatcaggcgtaa
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