Fructilactobacillus cliffordii: M3M38_03005
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Entry
M3M38_03005 CDS
T08843
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcli
Fructilactobacillus cliffordii
Pathway
fcli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M38_03005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcli03019
]
M3M38_03005
03009 Ribosome biogenesis [BR:
fcli03009
]
M3M38_03005
Enzymes [BR:
fcli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M3M38_03005
Messenger RNA biogenesis [BR:
fcli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M3M38_03005
Ribosome biogenesis [BR:
fcli03009
]
Prokaryotic type
rRNA helicases
M3M38_03005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
USS87041
LinkDB
All DBs
Position
complement(589205..590707)
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AA seq
500 aa
AA seq
DB search
MFQVGGTHLNFQELGLTASLLEAVAANGYTEPTAIQAQTIPLTLNGEDVIGQAQTGTGKT
AAFALPILQGIDVNNPDVQALVISPTRELAIQTQREIQKLGKGEGARAQVVYGGSDIRKQ
IYDLKKKPQIIVGTPGRLLDHIQRRTLKLDHVRFLVLDEADEMLNMGFLEDIEKIIKQTP
EDRQTMLFSATMPAPIKRVGVQFMTDPKQVKVKAKELTTDLVDQYYVKVRDNEKFDTMTR
LFDVNQPKVTIIFCRTKRRVDEVAKGLIARGYQAAGLHGDLTQNRRTQIMNEFKRDQINY
LVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPSEMSYLR
GIEKLTKVRMLPLKPPTADEALAGQLKFAKDDVAKLVQKTDTNRFSGVAQELLDQYDGLD
LVAALLNELSGDQVKVHITPERPLKSHGGRGNGRHSGGGYRRNNRRGGSSNYRGKRRNDH
REHGDQHHSRKNNFVIKNKH
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagtaggaggaacacatttgaattttcaagaattaggattaacagctagccta
ttagaagcagtggcagccaacgggtacacggaaccaactgccattcaggcccaaacgatt
cccttaactttaaatggggaagatgtgattggacaagcccaaacgggaaccggaaaaacg
gcggcttttgctctgcccattttgcaggggattgacgttaacaatccggacgtgcaggcg
ctagtaatttctcccacccgggaattagccattcagacccaacgtgagattcaaaagctg
gggaaaggagaaggagcccgcgcccaagtagtgtacggtggttctgacatccggaaacaa
atttatgacttaaagaagaaaccccagattatcgtgggaactcccggccggttgttggat
cacatccaacgccgcacgctgaagttagaccatgtgcgtttcctggttctcgatgaagcc
gacgaaatgttaaacatgggtttcttagaagacatcgaaaagattatcaaacaaacccct
gaggatcgacaaacaatgttattctcagctacgatgcccgctccgattaaacgggttgga
gtccagttcatgactgaccccaagcaggttaaggttaaggctaaagaactgacaaccgac
ttagtagatcagtattacgtaaaagttcgtgataatgagaagtttgatacgatgacccgg
ttatttgatgtaaaccaaccgaaagttaccatcatcttctgtcggaccaaacggcgggtg
gatgaagtggctaagggcctgattgcccgtgggtaccaggccgctggtttacacggagat
ttaacccaaaatcgacggacccagatcatgaatgaatttaaacgtgatcaaattaactac
ttggtcgctactgatgtggcagctcggggaattgatgtttctggggtaacccacgtttat
aactttgatatcccacaggatccagaaagttacgtgcaccggattggccggacgggtcga
gccggacatcacggaacgtctgtgacgtttgtgacgccaagcgaaatgagttacttgcgg
ggaattgaaaagttaaccaaggtgcggatgctaccattgaagccacctacagctgatgaa
gccttagctggtcaacttaagtttgctaaggatgacgttgccaaattagtgcaaaagacc
gataccaatcgctttagcggcgtagcccaagagttattggaccagtacgatggtcttgat
ttagtggctgctttgttaaatgagctttctggtgaccaggtgaaggtccacatcacaccc
gaacgtccgctgaagagtcatggtggtcgcgggaatggtcgtcacagtggaggtggatat
cgccgcaataatcgccggggtggttccagtaactaccgtggcaaacgccgtaacgatcat
cgcgaacatggcgaccaacatcacagtcgcaaaaacaactttgtgattaagaacaaacac
taa
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