Fructilactobacillus cliffordii: M3M38_05580
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Entry
M3M38_05580 CDS
T08843
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
fcli
Fructilactobacillus cliffordii
Pathway
fcli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcli00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
M3M38_05580
09124 Replication and repair
03420 Nucleotide excision repair
M3M38_05580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcli03021
]
M3M38_05580
03036 Chromosome and associated proteins [BR:
fcli03036
]
M3M38_05580
03400 DNA repair and recombination proteins [BR:
fcli03400
]
M3M38_05580
Enzymes [BR:
fcli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
M3M38_05580
Transcription machinery [BR:
fcli03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
M3M38_05580
Chromosome and associated proteins [BR:
fcli03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
M3M38_05580
DNA repair and recombination proteins [BR:
fcli03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
M3M38_05580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
PDDEXK_1
ENOX1
PhoH
HBB
Motif
Other DBs
NCBI-ProteinID:
USS86164
LinkDB
All DBs
Position
complement(1137471..1139825)
Genome browser
AA seq
784 aa
AA seq
DB search
MRKIGVRELVGFILRSGDLNSSLSSFNTPQAGTRIHKRLQHHRGKTYQAEAPLQTEVELN
GRPVLIHGRADGLIMQDDQVEIEEIKTSDVEWDFLPENQLILYWGQVKLYAALLMREQPN
IDQVRLTLTYVQTPDEVQTTEHQTITRTAALAFFEQVITEYEDWLALQESLARDRVQTAA
QVTFPFPTYRKGQRELAAVVYKSAVLGKHLLLEAPTGTGKTISTLFPAVKAFATDRVERV
FYFTAKQSTRRVAEAALAQLRERGLRIQSITLTAKDQIQFPEEVDVEPENNPYFQGYYDR
LKPALKAILTEGRHLSKDLIQSYARQYTLDPFEFSLDVSLFCDVIIGDYNYLFDPVVHLQ
RFFAVENRANFFLVDEAHNLVDRAREMYSTSLSQVDCEALLNDLPRNMANRSLRKRLQAM
SQQFQRLQDELPPHQTELDLADSDESFTQAVGKLSERIRQWLAKQPTGPKVEAVRLFFFA
CLTYSKINELFGTNFRFRVILQDGKITVRLFCMDASPFIKEQLELGRGSVLFSATLSPLP
YYQRVLGNEPDGLKYQLPSPFSSNSQTILIATYINTTYNQRTNSLAAIVASIHNLVTSKR
GNYLVFAPSNAYLDQIYQAYRDRFPEQAVQKQTPNMTPADRDQFLAAFQRPKTNPVLGFA
LLGGIFSEGIDLVGDRLIGTAIVGVGLPGLNSETDLIRDYFDQQNGQGFAFAYQLPGLNH
VFQAAGRVIRSVQDRGVILLLDRRFTEPRYRQWFPADWRTVHLVHNQDELRQQLQHFWQT
PNDL
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaaaaattggggtacgagaactagtcgggtttattctccgtagtggtgatttaaat
agttccttgagtagttttaacacgccccaggccggtacccggattcacaaacgccttcaa
caccatcggggtaaaacttaccaagcagaagctcccctgcaaacggaagtcgaactcaac
gggcgaccggtattgattcacggccgggccgacggattaatcatgcaggatgatcaggtt
gaaatcgaagagatcaaaacctcggacgtcgagtgggatttcttacccgaaaatcagctc
atcctatactggggccaagtgaaactctacgcggccttgttaatgcgggagcagccaaat
atcgaccaggttaggctcacgctgacctatgtccaaactcccgacgaggtccaaaccacg
gaacaccaaacaattacacgaacggcagctttggccttctttgagcaagtcatcactgaa
tatgaagactggcttgccctacaggaaagtttagctcgcgaccgggtccaaacggcagct
caggtgacctttcccttccctacatatcgcaaagggcagcgtgaacttgccgcggttgtc
tataaatcggccgtcctggggaaacatcttttattagaagcacccaccggaaccggaaaa
acgatctcgaccctctttccagcggtcaaggccttcgccactgaccgggtcgagcgggtc
ttttacttcacggccaagcaaagcacgcgccgggtcgcggaagcggccttggcgcaactc
cgcgagcgtggcttacggattcaaagcattaccctgacggcgaaggaccagattcagttt
ccggaagaagttgacgtcgaaccagagaataatccctactttcagggctactacgaccgt
ttaaaacccgccctcaaagcaatcctcacggaaggacggcacctctcaaaggacctcatt
caaagctacgcccggcagtataccctggatccgtttgaattttccttagacgtcagcttg
ttttgcgatgtcatcatcggcgactacaactacttgtttgatccggtagttcacctccaa
cgcttctttgcggtggaaaatcgggcgaacttctttttagttgacgaggcgcataaccta
gtagaccgggctcgggaaatgtactcaaccagcttaagccaagtggactgtgaagccctc
ctgaatgacttaccacgcaacatggccaaccgatccctgcgaaaacgcctgcaagccatg
tcacagcagtttcagcggctccaggatgaattgccaccgcaccaaaccgaactggattta
gccgattcagacgaatcgttcacccaagccgtcggtaaactcagcgagcgaatccgacag
tggttggccaaacagccgaccggtccgaaagtcgaagccgttcggctgtttttctttgcc
tgcttaacctacagcaagattaacgaactctttgggactaattttcgcttccgcgtgata
ctgcaggatgggaaaatcaccgtccgcctcttctgcatggatgccagtccgttcattaaa
gaacaactcgaactagggcgcggatccgttctcttttcggccacgttatcacctctacca
tattatcaacgggtcttaggaaacgaaccggatggcttaaaatatcagctgccatctcca
ttttcttctaattcccaaactatattgattgcaacttacattaatacaacttataatcaa
agaaccaatagtttagcagcaattgtcgccagtattcacaacttagtcacgagtaaacgc
ggcaactatttagtttttgccccctccaacgcatatctggaccagatttatcaggcttat
cgcgaccgatttccagagcaagcggtccaaaaacaaactccaaacatgactccggctgac
cgcgatcaatttttagcggcctttcaacgaccgaaaacgaaccccgtcctcggttttgcc
ctattaggcggaatcttttcggaaggcatcgatttagtcggtgaccggctgattgggact
gccatcgttggcgtcgggctaccgggactaaactccgaaaccgacttgattcgtgattat
tttgaccagcaaaacgggcaaggtttcgcctttgcctaccagcttccgggtttaaatcat
gtgtttcaggctgccggccgggtcattcggagtgtccaggatcgaggagtgattttacta
ttagaccgccggtttacggaaccgcgttaccgccagtggttcccggcagattggcggacc
gtccatcttgtccacaatcaggatgagttacggcaacaactacaacatttttggcaaaca
ccgaacgatttataa
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