| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
fcli Fructilactobacillus cliffordii
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:fcli00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M3M38_06085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:fcli03021]
M3M38_06085 (rpoC)
03400 DNA repair and recombination proteins [BR:fcli03400]
M3M38_06085 (rpoC)
Enzymes [BR:fcli01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M3M38_06085 (rpoC)
Transcription machinery [BR:fcli03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M3M38_06085 (rpoC)
DNA repair and recombination proteins [BR:fcli03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M3M38_06085 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1238848..1242492
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| AA seq |
1214 aa
MVDVNKFKSMQVGLAAPETIRSWSFGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWKC
ACGKYKGIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYYKGIPSRMGLVLDM
SPRSLEEVIYFAAYVVTDPGNTPMEKKQLLTEQEYRDKKREYGTRFEAKIGAEAIRTLLS
DVDLEKEVGELKEELKSATGQKRTRAIRRLDILEAFLTSGNQLTWMVMDAIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKLSQMGLPVS
MALELFKPFIMHELVERGLASNVKNAKREIERKDDVVFDVLPDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGNSMRLHPLVCAAYNADFDGDQMAIHVPLSEEAQAESRLLMAAAGHIL
APKDGKPVVAPSQDMVIGNYYLTMEEPNREGEGMIFNDPDEVELAYRDGLVHWHSRIGIP
AAAYPDKPFTDDQQDKIMVTSVGKVLFNQILPKAFTYLNEPTDTNLHGYVPDEYFLEPGE
DIHEHIANAELVRPFKKGFLSDIIAEVYDQYKVTETSELLDRIKDLGNDESTKSGLTVGM
SDIMDLHEKPKVVAAAHKKVDTITKQFRRGLITDQERYERVVNVWNEARDEIQDQLMKNF
DPENPIFMMSDSGARGNISNFTQLAGMRGLMASPDGKIMELPITSNFREGMSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREKDCGTDRGLTVTAITEGNEMIEPLY
DRILGRNAMKTVTNPQTGEVIVDRNEMIDDKKAQAIVDAGIEAVEIRSAFTCNTPHGVCE
RCYGQNLATGDEVEVGEAVGTVAAQSIGEPGTQLTLRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGKSTISEVTGVVELIEEDPAEGVKEITIQGKADTRKYKVPLTARMRVAEGDTV
RRGEALNEGSIDPKELLKIRDTLSTETYLLTAVQEVYRRQGVEVNDKHAEIMVRQMLRKV
RVMDPGDTDILPGTLIDIDDFKEQNRDAVMTGKVPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKVDPLIGLKENVIIGKLLPAGTGVHEYEDIEPEELGQTADQGVTA
PSDQTTSVDGDDAE |
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| NT seq |
3645 nt +upstreamnt +downstreamnt
atggttgatgtgaacaaatttaagagcatgcaagttgggttagctgctcccgaaacgatc
cgcagttggtcgtttggagaagttaagaagccagaaaccattaactaccggacgttgaaa
ccggaaaaagacggtttattcgacgaacggatctttggaccaaccaaggactggaaatgt
gcctgtgggaagtacaaaggaatccggtacaagggaattgtttgtgatcgctgtggtgta
gaagttacccgtgctaaggtccggcgggaacggatgggccacattgaattagcagcccct
gttacccacatttggtattacaagggaatcccgagccggatgggcttggtcttagacatg
agtccgcgctcacttgaagaagtcatctactttgctgcttacgttgtaactgatcctggc
aacacgcccatggaaaagaagcaactcttaacggaacaagaataccgggataaaaaacgg
gaatacggaacgcgctttgaagctaaaattggggccgaagccatccgaacgttgttatcc
gacgttgatcttgaaaaagaagttggtgaacttaaagaagaattaaaatccgcgaccggc
caaaaacggacccgggctattcggcggttagacattttggaagcctttctgacttctggg
aaccaactaacttggatggttatggatgctattccggtcatgccacctgacttacggccc
atggttcaactagaagggggtcggtttgcgacctctgacttaaacgacttgtaccggcgg
gtaatcaaccggaacaaccgattgaaacgtctgctggatttgcatgctccaggcattatc
gtgcaaaacgaaaaacggatgctgcaagaagctgtcgatgccttaatcgataacggacgg
cgtggtcgtccagttgctggtccaggaaaccggccgttgaaatctctgtctcatcttttg
aaggggaaacaaggtcggttccggcagaacctgctcggaaagcgggtcgactactctggt
cgttccgttatcgacgtgggtccatggttgaagttgagccaaatgggactgcccgtttct
atggctctcgaactgttcaagccgttcatcatgcatgaattggtagaacgcggtttggct
tctaacgtaaagaacgctaagcgcgaaattgaacgaaaggacgacgtggtctttgatgtc
ttgccagatgtcattaaggaacaccccgtgctgttaaaccgggccccaaccttgcaccgg
ttaggaattcaagcctttgaacctgtgctggttagtggaaactcgatgcgattgcatcct
ttagtttgtgccgcttacaacgccgactttgatggggaccaaatggccattcacgtgcca
ctgtcagaagaggcacaagcagaatcacgactcttgatggctgctgcgggacacattttg
gctcctaaagatggaaaaccagttgtggctccatcacaagatatggtaattgggaactac
tacctcaccatggaagaacccaaccgtgaaggggaaggcatgatcttcaatgatcctgat
gaagtggaattagcttatcgggatggcttggtacactggcacagtcggattggaattcca
gcggctgcttacccagacaagccgtttacggatgaccaacaagataaaattatggtaact
tccgtcggaaaggttctctttaaccaaatcttaccgaaggcctttacctacctcaacgaa
ccaactgataccaacctacatggttacgttccggatgaatacttcttggaaccaggcgaa
gacattcacgaacacattgccaatgccgaattagttcgtcctttcaagaaaggcttctta
tctgacatcattgccgaagtttacgatcaatacaaggtaacggaaacttccgaactcttg
gatcgcatcaaagatcttggtaacgatgaatcaacgaagtcgggattaacggtcggaatg
tctgacatcatggacctccatgaaaagcctaaggttgtggcagctgcccacaagaaggtt
gacaccattaccaagcaattccggcgtggtttgattactgatcaagaacgttacgaacga
gttgtgaacgtttggaacgaagctcgtgacgaaatccaagatcaattgatgaagaacttc
gatcccgaaaacccaatcttcatgatgagtgattctggggcccggggtaatatctctaac
tttacgcagttggccggaatgcggggcttgatggcttctcctgatggtaaaatcatggaa
ctgcccatcacttcgaacttccgggaaggaatgtccgttttggaaatgttcatttcgacc
cacggtgctcggaaagggatgaccgatacggccttgaagacggccaactctggttactta
acccggcggttagttgacgtggcgcaagacgttatcattcgggaaaaggactgtggaact
gatcgtggtttgacggttaccgccattacggaaggtaacgaaatgatcgaaccactttac
gaccgaatcttgggccgaaacgccatgaagaccgttacgaacccacaaactggtgaagta
attgtggatcgaaacgagatgattgacgacaagaaggcccaagctatcgtggatgcaggg
attgaagccgttgaaattcgttcggccttcacttgcaacacgccccacggggtttgtgaa
cgttgttatggtcaaaacttggctactggtgacgaagtggaagttggagaagcagtcgga
acggttgctgctcaatccatcggggaacccggaacgcagttaacgttacggactttccat
accggtggggttgcaagtaacaccgatatcacccagggacttccccgggtgcaagaaatc
tttgaagcacggaatccaaaaggtaagtcaaccatcagtgaagttactggggtcgttgaa
ttaattgaagaggatccggctgaaggggttaaggaaatcaccatccaaggaaaagccgat
accagaaagtacaaggttccattgacagctcggatgcgggttgctgaaggtgacacggtt
cgccgtggggaagccttgaacgaaggttcgattgatccaaaggaattgctgaagatcaga
gatactctgtctacggaaacctacctgttaacggcggtgcaagaagtttaccggcgtcaa
ggggtggaagtgaacgataagcatgccgaaatcatggttcggcagatgttgcggaaagtt
cgggtcatggatccgggtgatacggacatcttgccaggaactttgattgacattgatgat
ttcaaggaacagaaccgggatgcagttatgactggcaaggttccagccacggctcgtccg
gtgctcctcgggattacgaaggctgccctagaaacgaacagtttcttgtcagctgcttcc
ttccaagaaacgacgcgggttctgaccgacgctgctattcgtggtaaggttgatccgttg
attggattgaaagaaaatgtaattatcgggaagttgttaccagctggaacgggtgttcat
gaatatgaagacatcgaaccagaagaactggggcaaactgctgatcaaggagtgactgct
ccttctgaccagacgaccagtgttgatggcgacgacgctgaataa |
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